Variant report

Variant	rs10145092
Chromosome Location	chr14:45476053-45476054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 203 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs10083439	0.82[EUR][1000 genomes]
rs10129173	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10130377	0.95[YRI][hapmap]
rs10131066	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10131615	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10132389	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132547	0.94[ASW][hapmap];0.82[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132949	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134071	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134598	0.83[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10135085	0.94[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10135890	0.82[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136008	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136855	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136926	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10138272	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138997	0.94[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs10139998	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140013	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10140049	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10140108	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10140222	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140318	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141474	0.86[JPT][hapmap];0.92[YRI][hapmap]
rs10143806	0.88[JPT][hapmap];0.93[YRI][hapmap];0.82[EUR][1000 genomes]
rs10145267	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10146395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10147499	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149484	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150646	0.82[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs10152101	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1053667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11157423	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11157424	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11844832	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11845088	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845904	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11845956	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846656	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847039	0.81[EUR][1000 genomes]
rs11847336	0.81[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs11848334	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs11848799	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11849208	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849583	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850363	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851218	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11851357	0.81[EUR][1000 genomes]
rs11851516	0.82[EUR][1000 genomes]
rs11851962	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs11852210	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs12100842	0.83[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593279	0.81[EUR][1000 genomes]
rs17115639	0.81[EUR][1000 genomes]
rs17115646	0.81[EUR][1000 genomes]
rs17115648	0.81[EUR][1000 genomes]
rs17115652	0.81[EUR][1000 genomes]
rs17115677	0.82[EUR][1000 genomes]
rs17115688	0.92[EUR][1000 genomes]
rs17115703	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17115718	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17115809	0.94[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17115811	0.94[ASW][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2016738	0.88[JPT][hapmap]
rs2033385	0.83[ASW][hapmap];0.90[YRI][hapmap]
rs2295157	0.82[EUR][1000 genomes]
rs2295158	0.85[GIH][hapmap]
rs28432035	0.81[EUR][1000 genomes]
rs28448551	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28517769	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558522	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28572336	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28594810	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28622413	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637857	0.83[ASW][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs28681969	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695721	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28703636	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756151	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2899960	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736747	0.82[CEU][hapmap]
rs3783700	0.88[JPT][hapmap]
rs3783702	0.88[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs3825625	0.94[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs3825627	0.88[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs3825628	0.82[EUR][1000 genomes]
rs3825629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4141578	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56706956	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56836063	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57003561	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57129780	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57602646	0.82[EUR][1000 genomes]
rs57614513	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57694277	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58013518	0.92[EUR][1000 genomes]
rs58338525	0.81[EUR][1000 genomes]
rs58826926	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58920861	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59353994	0.82[EUR][1000 genomes]
rs59992752	0.82[EUR][1000 genomes]
rs60521816	0.82[EUR][1000 genomes]
rs60595870	0.80[EUR][1000 genomes]
rs60891427	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61155826	0.82[EUR][1000 genomes]
rs61707578	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6572290	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs66488071	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66535982	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66662385	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67643245	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140739	0.82[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs7145831	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7145870	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7146566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7147644	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7147811	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7151557	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7153451	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7158846	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7161603	0.81[EUR][1000 genomes]
rs72474138	0.82[EUR][1000 genomes]
rs72621070	1.00[ASN][1000 genomes]
rs73334104	0.92[EUR][1000 genomes]
rs73334112	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73334114	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73334131	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73334135	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334148	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334154	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334157	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334162	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334165	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334172	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334176	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334913	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73340611	0.82[EUR][1000 genomes]
rs73340622	0.82[EUR][1000 genomes]
rs73340626	0.82[EUR][1000 genomes]
rs73346336	0.90[EUR][1000 genomes]
rs73346344	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73346351	0.96[EUR][1000 genomes]
rs73346360	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73348060	0.98[ASN][1000 genomes]
rs73348062	0.95[ASN][1000 genomes]
rs73348065	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73348069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348075	1.00[ASN][1000 genomes]
rs73348076	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73348088	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348095	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73348285	1.00[ASN][1000 genomes]
rs73348939	0.82[EUR][1000 genomes]
rs73348947	0.82[EUR][1000 genomes]
rs73348950	0.82[EUR][1000 genomes]
rs73348953	0.82[EUR][1000 genomes]
rs73348959	0.82[EUR][1000 genomes]
rs73348966	0.88[EUR][1000 genomes]
rs73348975	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73348977	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73348981	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73348987	0.92[EUR][1000 genomes]
rs73349816	0.81[ASN][1000 genomes]
rs73349820	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73349853	0.82[EUR][1000 genomes]
rs73349857	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73349858	0.82[EUR][1000 genomes]
rs73349868	0.82[EUR][1000 genomes]
rs73350007	0.94[ASN][1000 genomes]
rs73350201	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73352233	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73352238	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73352246	1.00[ASN][1000 genomes]
rs73353641	0.83[ASN][1000 genomes]
rs73353644	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73353647	0.86[ASN][1000 genomes]
rs73353650	0.86[ASN][1000 genomes]
rs73353657	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7493246	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7493823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006685	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8009193	0.94[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs8015453	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017844	0.94[ASW][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]
rs8018380	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8022008	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022499	0.82[EUR][1000 genomes]
rs8022608	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323106	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv1042585	chr14:45401506-45497907	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1045869	chr14:45415597-45487903	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv1801436	chr14:45441932-45476174	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1038384	chr14:45447187-45521583	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1260	chr14:45457666-45502671	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10145092	FANCM	cis	lymphoblastoid	seeQTL
rs10145092	RP11-398E10.1	cis	Nerve Tibial	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45436200-45486600	Weak transcription	Gastric	stomach
2	chr14:45437000-45496000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:45437000-45507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:45437000-45514600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:45438000-45501800	Weak transcription	Fetal Kidney	kidney
6	chr14:45449400-45482000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:45450000-45501800	Weak transcription	Lung	lung
8	chr14:45452000-45482200	Weak transcription	NHDF-Ad	bronchial
9	chr14:45452600-45482400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:45452800-45477800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:45458200-45478000	Weak transcription	Small Intestine	intestine
12	chr14:45458200-45487400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:45458200-45487400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:45458200-45501400	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:45458200-45507400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:45458400-45481600	Weak transcription	Adipose Nuclei	Adipose
17	chr14:45458800-45486600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:45458800-45503400	Weak transcription	HUVEC	blood vessel
19	chr14:45459400-45507600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:45459600-45477000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:45460800-45495800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:45461200-45501800	Weak transcription	HSMMtube	muscle
23	chr14:45461800-45501400	Weak transcription	NHEK	skin
24	chr14:45462400-45506200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:45463600-45507000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:45463800-45488200	Weak transcription	Fetal Brain Male	brain
27	chr14:45464400-45482200	Weak transcription	HSMM	muscle
28	chr14:45464400-45507400	Weak transcription	Spleen	Spleen
29	chr14:45464600-45481400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:45464600-45507400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:45464600-45507600	Weak transcription	Hela-S3	cervix
32	chr14:45465600-45507800	Weak transcription	Fetal Heart	heart
33	chr14:45465800-45487600	Weak transcription	Placenta	Placenta
34	chr14:45465800-45490200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:45465800-45524000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr14:45465800-45552600	Weak transcription	HMEC	breast
37	chr14:45466200-45477000	Weak transcription	Dnd41	blood
38	chr14:45466200-45508600	Weak transcription	HepG2	liver
39	chr14:45466400-45477000	Weak transcription	A549	lung
40	chr14:45466400-45477000	Weak transcription	GM12878-XiMat	blood
41	chr14:45466400-45477200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:45466400-45485400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:45466400-45487400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:45466400-45487600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:45466400-45488000	Weak transcription	Brain Angular Gyrus	brain
46	chr14:45466400-45503000	Weak transcription	Esophagus	oesophagus
47	chr14:45466400-45508000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:45466600-45485400	Weak transcription	Thymus	Thymus
49	chr14:45466600-45487400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:45466600-45496000	Weak transcription	Pancreas	Pancrea

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