Variant report

Variant	rs6573546
Chromosome Location	chr14:64636563-64636564
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11158524	1.00[AMR][1000 genomes]
rs17101516	1.00[AMR][1000 genomes]
rs17101525	1.00[AMR][1000 genomes]
rs17101669	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17101673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34625768	1.00[AMR][1000 genomes]
rs57259697	1.00[AMR][1000 genomes]
rs58382551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59237063	1.00[AMR][1000 genomes]
rs59585806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60378481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141086	1.00[AMR][1000 genomes]
rs7147564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148856	1.00[AMR][1000 genomes]
rs7152768	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152843	1.00[AMR][1000 genomes]
rs7155113	1.00[AMR][1000 genomes]
rs7155539	1.00[AMR][1000 genomes]
rs7156636	1.00[AMR][1000 genomes]
rs7157465	1.00[AMR][1000 genomes]
rs7161183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007874	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012830	1.00[AMR][1000 genomes]
rs8017849	1.00[AMR][1000 genomes]
rs8018044	1.00[AMR][1000 genomes]
rs8018232	1.00[AMR][1000 genomes]
rs8018843	1.00[AMR][1000 genomes]
rs8022302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
7	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:64591000-64649000	Strong transcription	Liver	Liver
9	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
12	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:64612600-64640000	Strong transcription	Dnd41	blood
17	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
18	chr14:64614200-64637000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64614800-64644400	Weak transcription	HSMM	muscle
20	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:64617800-64649000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:64620000-64651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:64620400-64653000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:64624200-64640400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:64624800-64639200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr14:64624800-64645800	Strong transcription	Fetal Intestine Large	intestine
27	chr14:64625000-64649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:64625000-64658000	Weak transcription	HUVEC	blood vessel
29	chr14:64625400-64640800	Strong transcription	Fetal Stomach	stomach
30	chr14:64627000-64638200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:64627200-64660400	Weak transcription	Fetal Heart	heart
32	chr14:64627400-64646400	Weak transcription	Brain Anterior Caudate	brain
33	chr14:64627800-64641000	Strong transcription	Fetal Intestine Small	intestine
34	chr14:64628000-64639600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:64628000-64640000	Strong transcription	Left Ventricle	heart
36	chr14:64628200-64636800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:64628200-64640200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr14:64628200-64649000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr14:64628600-64638000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:64628600-64639600	Strong transcription	Fetal Brain Female	brain
41	chr14:64628600-64640200	Strong transcription	Adipose Nuclei	Adipose
42	chr14:64628600-64648800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:64628800-64637400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:64628800-64637400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:64628800-64637800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:64628800-64639600	Strong transcription	Fetal Muscle Leg	muscle
47	chr14:64628800-64640000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:64628800-64640000	Strong transcription	Thymus	Thymus
49	chr14:64628800-64640200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:64631000-64639000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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