Variant report

Variant	rs7148856
Chromosome Location	chr14:64492910-64492911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10498513	0.91[AFR][1000 genomes]
rs11158524	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17101447	1.00[AMR][1000 genomes]
rs17101451	1.00[AMR][1000 genomes]
rs17101516	1.00[AMR][1000 genomes]
rs17101525	1.00[AMR][1000 genomes]
rs17101669	1.00[AMR][1000 genomes]
rs17101673	1.00[AMR][1000 genomes]
rs34625768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56780964	0.95[AFR][1000 genomes]
rs56999560	0.93[AFR][1000 genomes]
rs57051751	1.00[AMR][1000 genomes]
rs57259697	1.00[AMR][1000 genomes]
rs58382551	1.00[AMR][1000 genomes]
rs59237063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59585806	1.00[AMR][1000 genomes]
rs60378481	1.00[AMR][1000 genomes]
rs6573540	1.00[AMR][1000 genomes]
rs6573546	1.00[AMR][1000 genomes]
rs7141086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147564	1.00[AMR][1000 genomes]
rs7152768	1.00[AMR][1000 genomes]
rs7152843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7156636	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161183	1.00[AMR][1000 genomes]
rs8007874	1.00[AMR][1000 genomes]
rs8009887	0.95[AFR][1000 genomes]
rs8009918	0.95[AFR][1000 genomes]
rs8012830	1.00[AMR][1000 genomes]
rs8017849	1.00[AMR][1000 genomes]
rs8018044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018843	1.00[AMR][1000 genomes]
rs8022052	1.00[AMR][1000 genomes]
rs8022302	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv902020	chr14:64434288-64506541	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1821411	chr14:64488037-64506541	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64457000-64502000	Strong transcription	Placenta	Placenta
2	chr14:64457000-64519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:64460000-64513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:64460600-64495000	Weak transcription	NHDF-Ad	bronchial
5	chr14:64466600-64513200	Weak transcription	NHEK	skin
6	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:64469600-64518400	Weak transcription	HMEC	breast
9	chr14:64471800-64505200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:64473000-64515000	Weak transcription	Hela-S3	cervix
11	chr14:64474400-64505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
13	chr14:64475600-64505600	Weak transcription	Esophagus	oesophagus
14	chr14:64475600-64518400	Weak transcription	Gastric	stomach
15	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:64480400-64494200	Weak transcription	HepG2	liver
17	chr14:64481400-64503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
19	chr14:64481600-64502400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:64482200-64500200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:64482400-64493600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:64482400-64503800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:64482600-64496000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:64482800-64503800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:64483800-64503800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:64484000-64503800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:64484200-64500400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:64484400-64499200	Strong transcription	Primary T cells from cord blood	blood
29	chr14:64485800-64499000	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:64486000-64497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:64486000-64503200	Strong transcription	Dnd41	blood
32	chr14:64486200-64501800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:64486800-64498600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr14:64487000-64493600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:64487000-64494200	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:64487000-64499200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr14:64487200-64500400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr14:64487400-64493600	Strong transcription	Fetal Kidney	kidney
39	chr14:64487400-64494600	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr14:64487400-64495600	Strong transcription	Fetal Intestine Large	intestine
41	chr14:64487400-64499000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:64487600-64493600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:64487600-64498800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:64487800-64499200	Strong transcription	Liver	Liver
45	chr14:64487800-64501600	Weak transcription	NHLF	lung
46	chr14:64488000-64493000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:64488000-64493600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:64488000-64493800	Strong transcription	Thymus	Thymus
49	chr14:64488000-64494000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:64488000-64494800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links