Variant report

Variant	rs6573592
Chromosome Location	chr14:65672776-65672777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65672466..65675216-chr14:65679164..65681633,2	MCF-7	breast:
2	chr14:65665649..65668443-chr14:65670507..65672924,2	K562	blood:
3	chr14:65672206..65674878-chr14:65876967..65879221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1760956	0.80[AFR][1000 genomes]
rs55931761	0.96[ASN][1000 genomes]
rs56082447	0.86[ASN][1000 genomes]
rs8008936	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65669000-65673400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65670200-65672800	Enhancers	Primary B cells from cord blood	blood
3	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65670400-65673200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:65671000-65672800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
7	chr14:65671200-65672800	Enhancers	Fetal Intestine Large	intestine
8	chr14:65671200-65672800	Enhancers	Fetal Intestine Small	intestine
9	chr14:65671200-65672800	Enhancers	Spleen	Spleen
10	chr14:65671200-65675800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:65671400-65672800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:65671400-65673400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:65671400-65673600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:65671400-65675800	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:65671600-65672800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:65671600-65674000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr14:65671600-65675800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr14:65671800-65672800	Enhancers	Stomach Mucosa	stomach
20	chr14:65671800-65673400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:65671800-65674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:65671800-65674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:65671800-65675400	Enhancers	Duodenum Mucosa	Duodenum
24	chr14:65671800-65678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:65671800-65678800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr14:65672000-65672800	Enhancers	Primary T cells from cord blood	blood
27	chr14:65672000-65673000	Enhancers	HepG2	liver
28	chr14:65672000-65673800	Enhancers	NHEK	skin
29	chr14:65672000-65674400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr14:65672000-65675000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr14:65672000-65675200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr14:65672000-65675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:65672000-65675600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr14:65672000-65678400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr14:65672200-65673000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:65672200-65673800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:65672200-65674000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:65672200-65674000	Enhancers	Thymus	Thymus
39	chr14:65672200-65674200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:65672200-65681400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:65672400-65673400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr14:65672400-65674200	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr14:65672400-65674200	Enhancers	NH-A	brain
44	chr14:65672400-65674400	Flanking Active TSS	GM12878-XiMat	blood
45	chr14:65672600-65672800	Enhancers	Adipose Nuclei	Adipose
46	chr14:65672600-65673000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr14:65672600-65673800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:65672600-65673800	Enhancers	HMEC	breast
49	chr14:65672600-65673800	Enhancers	HSMM	muscle
50	chr14:65672600-65673800	Enhancers	NHDF-Ad	bronchial

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