Variant report
| Variant | rs657370 |
|---|---|
| Chromosome Location | chr1:210493052-210493053 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:210492357..210495027-chr1:210501320..210503618,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000054392 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1005174 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10863820 | 0.83[EUR][1000 genomes] |
| rs11119458 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11119459 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11119460 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11119462 | 0.83[EUR][1000 genomes] |
| rs1338288 | 0.83[EUR][1000 genomes] |
| rs1338289 | 0.83[EUR][1000 genomes] |
| rs2143591 | 0.83[EUR][1000 genomes] |
| rs2357435 | 0.81[EUR][1000 genomes] |
| rs3765886 | 0.83[EUR][1000 genomes] |
| rs4844520 | 0.83[EUR][1000 genomes] |
| rs4844997 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7525927 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv8769 | chr1:210403509-210564588 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 126 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
