Variant report

Variant	rs657560
Chromosome Location	chr7:64700434-64700435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr7:64700086-64700513	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:64700200-64700623	HUVEC	blood vessel:	n/a	n/a
3	BACH1	chr7:64700378-64700443	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:64699982-64700535	HCT-116	colon:	n/a	n/a
5	YY1	chr7:64699985-64700610	SK-N-SH_RA	brain:	n/a	chr7:64700541-64700552
6	ZNF263	chr7:64700245-64700726	HEK293-T-REx	kidney:	n/a	chr7:64700420-64700429
7	CTCF	chr7:64700320-64700470	HCPEpiC	choroid plexus:	n/a	n/a
8	CTCF	chr7:64700320-64700470	HepG2	liver:	n/a	n/a
9	ZBTB7A	chr7:64699909-64700731	ECC-1	luminal epithelium:	n/a	n/a
10	POLR2A	chr7:64700070-64700545	Gliobla	brain:	n/a	n/a
11	MXI1	chr7:64700433-64700652	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chr7:64699913-64700736	ECC-1	luminal epithelium:	n/a	chr7:64700061-64700071 chr7:64700164-64700174
13	TBP	chr7:64700405-64700586	HepG2	liver:	n/a	n/a
14	POLR2A	chr7:64700384-64700601	HUVEC	blood vessel:	n/a	n/a
15	CTCF	chr7:64700300-64700450	NHEK	skin:	n/a	n/a
16	MAX	chr7:64699724-64700742	ECC-1	luminal epithelium:	n/a	chr7:64700061-64700071 chr7:64700164-64700174
17	NFIC	chr7:64700084-64700794	ECC-1	luminal epithelium:	n/a	n/a
18	YY1	chr7:64699888-64700558	SK-N-SH_RA	brain:	n/a	chr7:64700541-64700552
19	POLR2A	chr7:64699942-64700709	ECC-1	luminal epithelium:	n/a	n/a
20	ZBTB7A	chr7:64700002-64700773	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr7:64699926-64700747	ECC-1	luminal epithelium:	n/a	n/a
22	POLR2A	chr7:64700202-64700632	H1-hESC	embryonic stem cell:	n/a	n/a
23	TBP	chr7:64700103-64700737	H1-hESC	embryonic stem cell:	n/a	n/a
24	ZNF143	chr7:64700066-64700625	H1-hESC	embryonic stem cell:	n/a	n/a
25	TAF1	chr7:64700052-64700657	ECC-1	luminal epithelium:	n/a	n/a
26	YY1	chr7:64699949-64700518	HepG2	liver:	n/a	n/a
27	RCOR1	chr7:64700289-64700648	HepG2	liver:	n/a	n/a
28	POLR2A	chr7:64699964-64700531	A549	lung:	n/a	n/a
29	RAD21	chr7:64699996-64700690	SK-N-SH_RA	brain:	n/a	n/a
30	RAD21	chr7:64699931-64700434	H1-hESC	embryonic stem cell:	n/a	n/a
31	GABPA	chr7:64700349-64700676	H1-hESC	embryonic stem cell:	n/a	n/a
32	TCF12	chr7:64700175-64700727	ECC-1	luminal epithelium:	n/a	chr7:64700347-64700357
33	MAX	chr7:64700226-64700834	A549	lung:	n/a	n/a
34	NFIC	chr7:64700084-64700770	ECC-1	luminal epithelium:	n/a	n/a
35	SIN3A	chr7:64700152-64700643	H1-hESC	embryonic stem cell:	n/a	n/a
36	HMGN3	chr7:64700381-64700594	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:64692149..64693679-chr7:64700299..64702736,2	K562	blood:
2	chr7:64699829..64702415-chr7:64709337..64710930,2	K562	blood:
3	chr7:64695294..64697015-chr7:64698823..64700589,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237026	TF binding region

Extended variants
information (count: 280 )
Associated
traits (count: 40 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10234467	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs10244630	0.91[CEU][hapmap]
rs10263834	0.91[CEU][hapmap]
rs10277384	0.91[CEU][hapmap]
rs10949986	0.92[CEU][hapmap]
rs10949991	0.92[CEU][hapmap]
rs10949992	0.92[CEU][hapmap]
rs10949993	0.92[CEU][hapmap]
rs11761772	0.92[CEU][hapmap]
rs11769148	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770225	0.92[CEU][hapmap];0.95[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs12535182	0.92[CEU][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs12536316	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs12668784	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap]
rs12669746	0.91[CEU][hapmap]
rs13221806	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13223327	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13227242	0.91[EUR][1000 genomes]
rs13227243	0.91[EUR][1000 genomes]
rs13227507	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13229781	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs13234392	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs13240722	0.84[CEU][hapmap]
rs1543851	0.88[CEU][hapmap]
rs17710097	0.96[CEU][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs17782771	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2103148	0.91[CEU][hapmap]
rs2116213	0.84[CEU][hapmap]
rs2418470	0.81[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap]
rs2419281	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs2419417	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2419785	0.84[CEU][hapmap]
rs2419789	0.84[CEU][hapmap]
rs28496606	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28877001	0.84[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs2900858	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2900982	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs34739196	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35513558	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap]
rs35723371	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3857677	0.92[CEU][hapmap]
rs3899200	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4717246	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs4717251	0.84[CEU][hapmap]
rs4717252	0.82[CEU][hapmap]
rs4717253	0.84[CEU][hapmap]
rs4717255	0.84[CEU][hapmap]
rs4717256	0.88[CEU][hapmap]
rs4718188	0.84[CEU][hapmap]
rs4718207	0.88[CEU][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs4718211	0.92[CEU][hapmap]
rs4718218	0.92[CEU][hapmap]
rs4718221	0.92[CEU][hapmap]
rs4718222	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs4718224	0.91[CEU][hapmap]
rs4718225	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs4718239	0.84[CEU][hapmap]
rs4718240	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs495336	0.84[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs517258	0.92[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs532409	0.92[CEU][hapmap]
rs549970	0.84[CEU][hapmap]
rs593619	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594456	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608809	0.92[CEU][hapmap]
rs6460230	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap]
rs6460232	0.92[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs6460247	0.84[CEU][hapmap]
rs6460248	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs658360	0.84[CEU][hapmap];0.95[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs658606	0.84[CEU][hapmap]
rs666389	0.92[CEU][hapmap]
rs66671129	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs673957	0.84[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6948240	0.92[CEU][hapmap];0.95[GIH][hapmap];0.92[TSI][hapmap]
rs6954951	0.92[CEU][hapmap]
rs6956631	0.84[CEU][hapmap]
rs6973096	0.92[CEU][hapmap]
rs6973539	0.86[CEU][hapmap]
rs6974876	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7778919	0.82[EUR][1000 genomes]
rs7779837	0.84[CEU][hapmap]
rs7788253	0.83[CEU][hapmap]
rs7792874	0.84[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7796045	0.84[GIH][hapmap]
rs7796077	0.84[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7797915	0.83[CEU][hapmap]
rs7799516	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7802108	0.92[CEU][hapmap]
rs7807271	0.84[CEU][hapmap]
rs7809513	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:189 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1033517	chr7:64443052-64942418	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv538893	chr7:64443052-64942418	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1034625	chr7:64456197-64850413	Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1019089	chr7:64456197-64874187	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1023699	chr7:64456197-64942418	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv517778	chr7:64462326-65326821	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv917231	chr7:64478253-65300317	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
10	esv34341	chr7:64478386-65012082	Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	esv2752166	chr7:64478386-65208605	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv1029796	chr7:64494934-65302696	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv916005	chr7:64499811-65012082	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv533081	chr7:64499945-65208605	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
15	esv3339156	chr7:64510176-65349050	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
16	nsv888286	chr7:64529883-64800432	Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv888287	chr7:64537992-64990806	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	esv2758117	chr7:64551274-65208605	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	esv2759534	chr7:64551274-65373851	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv427788	chr7:64551274-65390424	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
21	esv2752167	chr7:64557394-65012082	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	esv2752168	chr7:64557394-65012082	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	esv2752169	chr7:64557394-65012082	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv429768	chr7:64557394-65012082	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
25	nsv1021867	chr7:64565573-65012082	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
26	nsv1032570	chr7:64565573-65184339	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv1029343	chr7:64566957-65208605	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	nsv538894	chr7:64566957-65208605	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	nsv869856	chr7:64567013-65196403	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv607316	chr7:64582849-65208605	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
31	nsv469565	chr7:64590611-64813395	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv482415	chr7:64590611-64813395	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	esv2761084	chr7:64594065-64967767	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	esv2764020	chr7:64594065-65351820	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
35	nsv1032227	chr7:64594329-64917141	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	nsv1016806	chr7:64594329-64941887	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1015575	chr7:64594329-64947974	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1021106	chr7:64594329-64951818	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
39	nsv1016496	chr7:64594329-64960445	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
40	nsv1016392	chr7:64594329-64967755	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
41	nsv1020647	chr7:64594329-64997960	Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv1019148	chr7:64594329-65002671	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
43	nsv1017973	chr7:64594329-65012082	Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
44	nsv1018590	chr7:64594329-65012082	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
45	nsv1021410	chr7:64594329-65012082	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv1034505	chr7:64594329-65012082	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	nsv1029844	chr7:64594329-65094953	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1017365	chr7:64594329-65106792	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv1032262	chr7:64594329-65161364	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
50	nsv1023425	chr7:64594329-65162170	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:40)

SNP	Gene	Cis/trans	Tissue	Source
rs657560	CCT6P3	cis	lung	GTEx
rs657560	RP11-460N20.4	cis	Esophagus Muscularis	GTEx
rs657560	CCT6P3	cis	Adipose Subcutaneous	GTEx
rs657560	RP11-460N20.5	cis	Whole Blood	GTEx
rs657560	ERV3	cis	cerebellum	SCAN
rs657560	ZNF273	cis	cerebellum	SCAN
rs657560	ERV3-1	cis	Artery Aorta	GTEx
rs657560	RP11-460N20.4	cis	Adipose Subcutaneous	GTEx
rs657560	RP11-797H7.3	cis	Adipose Subcutaneous	GTEx
rs657560	ERV3	cis	multi-tissue	Pritchard
rs657560	RP11-460N20.5	cis	Thyroid	GTEx
rs657560	INTS4L1	cis	Skin Sun Exposed Lower leg	GTEx
rs657560	ZNF273	cis	Thyroid	GTEx
rs657560	RP11-460N20.4	cis	lung	GTEx
rs657560	RP11-797H7.5	cis	Thyroid	GTEx
rs657560	SEPHS1P1	cis	Muscle Skeletal	GTEx
rs657560	RP11-460N20.5	cis	lung	GTEx
rs657560	AC104057.1	cis	Adipose Subcutaneous	GTEx
rs657560	CCT6P3	cis	Artery Tibial	GTEx
rs657560	RP11-460N20.5	cis	Artery Aorta	GTEx
rs657560	CCT6P3	cis	Esophagus Mucosa	GTEx
rs657560	INTS4L1	cis	Nerve Tibial	GTEx
rs657560	CCT6P3	cis	Skin Sun Exposed Lower leg	GTEx
rs657560	RP11-460N20.4	cis	Esophagus Mucosa	GTEx
rs657560	RP11-460N20.5	cis	Esophagus Mucosa	GTEx
rs657560	RP11-460N20.5	cis	Artery Tibial	GTEx
rs657560	CCT6P3	cis	Whole Blood	GTEx
rs657560	CCT6P3	cis	Nerve Tibial	GTEx
rs657560	RP11-460N20.5	cis	Nerve Tibial	GTEx
rs657560	RP11-460N20.5	cis	Adipose Subcutaneous	GTEx
rs657560	RP11-479O9.2	cis	lung	GTEx
rs657560	INTS4L1	cis	Thyroid	GTEx
rs657560	RP11-460N20.5	cis	Esophagus Muscularis	GTEx
rs657560	ZNF273	cis	parietal	SCAN
rs657560	ERV3	cis	parietal	SCAN
rs657560	RP11-667F9.1	cis	Adipose Subcutaneous	GTEx
rs657560	RP11-797H7.3	cis	Thyroid	GTEx
rs657560	ZNF273	cis	lung	GTEx
rs657560	INTS4L1	cis	Esophagus Muscularis	GTEx
rs657560	RP11-460N20.4	cis	Artery Tibial	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64699600-64700600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
2	chr7:64699800-64700600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:64699800-64700600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
4	chr7:64699800-64700600	Active TSS	Brain Hippocampus Middle	brain
5	chr7:64699800-64700600	Active TSS	Gastric	stomach
6	chr7:64699800-64700800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr7:64699800-64700800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:64699800-64700800	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr7:64699800-64700800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr7:64699800-64700800	Active TSS	Brain Angular Gyrus	brain
11	chr7:64699800-64700800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr7:64699800-64700800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr7:64699800-64700800	Active TSS	Fetal Brain Female	brain
14	chr7:64699800-64700800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
15	chr7:64699800-64700800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
16	chr7:64699800-64700800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
17	chr7:64699800-64700800	Active TSS	HSMM	muscle
18	chr7:64699800-64701000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr7:64699800-64701000	Active TSS	A549	lung
20	chr7:64700000-64700600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:64700000-64700600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:64700000-64700600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:64700000-64700600	Active TSS	Aorta	Aorta
24	chr7:64700000-64700600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
25	chr7:64700000-64700600	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr7:64700000-64700600	Active TSS	Right Atrium	heart
27	chr7:64700000-64700800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr7:64700000-64700800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:64700000-64700800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:64700000-64700800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:64700000-64700800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:64700000-64700800	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr7:64700000-64700800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:64700000-64700800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:64700000-64700800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:64700000-64700800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:64700000-64700800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:64700000-64700800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:64700000-64700800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
40	chr7:64700000-64700800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr7:64700000-64700800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr7:64700000-64700800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
43	chr7:64700000-64700800	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr7:64700000-64700800	Active TSS	Left Ventricle	heart
45	chr7:64700000-64700800	Flanking Active TSS	Ovary	ovary
46	chr7:64700000-64700800	Bivalent/Poised TSS	Thymus	Thymus
47	chr7:64700000-64700800	Bivalent/Poised TSS	HepG2	liver
48	chr7:64700000-64700800	Active TSS	HSMMtube	muscle
49	chr7:64700000-64701000	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr7:64700000-64701000	Active TSS	HUES6 Cell Line	embryonic stem cell

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