Variant report

Variant	rs66671129
Chromosome Location	chr7:64712912-64712913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:121)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:121 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr7:64712554-64713075	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr7:64712257-64712930	HepG2	liver:	n/a	n/a
3	EBF1	chr7:64712653-64712944	GM12878	blood:	n/a	n/a
4	REST	chr7:64712116-64712969	SK-N-SH	brain:	n/a	chr7:64712498-64712511
5	HMGN3	chr7:64712151-64712935	K562	blood:	n/a	n/a
6	MAX	chr7:64712072-64713042	ECC-1	luminal epithelium:	n/a	chr7:64712249-64712259
7	POLR2A	chr7:64712045-64712996	HepG2	liver:	n/a	n/a
8	CTCF	chr7:64712800-64712950	HMEC	breast:	n/a	n/a
9	TBP	chr7:64712128-64712967	H1-hESC	embryonic stem cell:	n/a	n/a
10	MYBL2	chr7:64712617-64713038	HepG2	liver:	n/a	n/a
11	POLR2A	chr7:64712055-64712978	H1-neurons	neurons:	n/a	n/a
12	MAX	chr7:64712028-64713179	HepG2	liver:	n/a	chr7:64712249-64712259
13	CEBPB	chr7:64712855-64712989	K562	blood:	n/a	n/a
14	POLR2A	chr7:64712120-64712913	HepG2	liver:	n/a	n/a
15	TCF12	chr7:64712118-64712998	ECC-1	luminal epithelium:	n/a	chr7:64712187-64712194 chr7:64712481-64712491
16	POLR2A	chr7:64712352-64712932	HepG2	liver:	n/a	n/a
17	MAZ	chr7:64712669-64713056	K562	blood:	n/a	n/a
18	SMC3	chr7:64712762-64712935	K562	blood:	n/a	n/a
19	POLR2A	chr7:64712599-64713075	HCT-116	colon:	n/a	n/a
20	WRNIP1	chr7:64712647-64712926	GM12878	blood:	n/a	n/a
21	MAX	chr7:64712050-64712986	H1-hESC	embryonic stem cell:	n/a	chr7:64712249-64712259
22	POLR2A	chr7:64712087-64713039	H1-neurons	neurons:	n/a	n/a
23	JUND	chr7:64712135-64712954	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr7:64712841-64712948	MCF-7	breast:	n/a	n/a
25	EP300	chr7:64712711-64713008	K562	blood:	n/a	n/a
26	JUND	chr7:64712708-64713004	K562	blood:	n/a	n/a
27	BACH1	chr7:64712089-64713051	H1-hESC	embryonic stem cell:	n/a	n/a
28	NR3C1	chr7:64712266-64712975	A549	lung:	n/a	n/a
29	TAF7	chr7:64712032-64712932	H1-hESC	embryonic stem cell:	n/a	n/a
30	RCOR1	chr7:64712558-64712916	HepG2	liver:	n/a	n/a
31	CTCF	chr7:64712755-64713043	GM12878	blood:	n/a	n/a
32	NR3C1	chr7:64712581-64712921	A549	lung:	n/a	n/a
33	CTBP2	chr7:64712234-64713006	H1-hESC	embryonic stem cell:	n/a	n/a
34	TBL1XR1	chr7:64712793-64712972	K562	blood:	n/a	n/a
35	POLR2A	chr7:64712729-64712929	MCF10A-Er-Src	breast:	n/a	n/a
36	MAZ	chr7:64712726-64713004	GM12878	blood:	n/a	n/a
37	RCOR1	chr7:64712672-64713087	K562	blood:	n/a	n/a
38	CTCF	chr7:64712820-64712970	SK-N-SH_RA	brain:	n/a	n/a
39	HDAC2	chr7:64712690-64713011	K562	blood:	n/a	n/a
40	SIN3A	chr7:64711987-64713138	H1-hESC	embryonic stem cell:	n/a	n/a
41	RCOR1	chr7:64712685-64713045	K562	blood:	n/a	n/a
42	POLR2A	chr7:64712224-64712915	HUVEC	blood vessel:	n/a	n/a
43	TAF1	chr7:64712575-64712948	PFSK-1	brain:	n/a	n/a
44	HA-E2F1	chr7:64712135-64713061	MCF-7	breast:	n/a	chr7:64712660-64712669 chr7:64712392-64712404
45	POLR2A	chr7:64712365-64712945	Gliobla	brain:	n/a	n/a
46	MAX	chr7:64711977-64713217	A549	lung:	n/a	chr7:64712249-64712259
47	CREB1	chr7:64712325-64712962	A549	lung:	n/a	n/a
48	POLR2A	chr7:64712158-64712985	GM12878	blood:	n/a	n/a
49	HEY1	chr7:64712119-64712991	HepG2	liver:	n/a	n/a
50	TAF1	chr7:64712539-64712924	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:64712896-64712946	HRE	kidney:	n/a
2	chr7:64712896-64712946	ProgFib	skin:	n/a
3	chr7:64712896-64712946	NB4	blood:	n/a
4	chr7:64712896-64712946	Jurkat	blood:	n/a
5	chr7:64712896-64712946	AG09309	skin:	n/a
6	chr7:64712896-64712946	H1-hESC	embryonic stem cell:	embryo
7	chr7:64712896-64712946	K562	blood:	n/a
8	chr7:64712896-64712946	PFSK-1	brain:	n/a
9	chr7:64712896-64712946	BE2_C	brain:	n/a
10	chr7:64712896-64712946	NHBE	bronchial:	n/a
11	chr7:64712896-64712946	HRCEpiC	kidney:	n/a
12	chr7:64712896-64712946	ovcar-3	ovarian:	n/a
13	chr7:64712896-64712946	HMEC	breast:	n/a
14	chr7:64712896-64712946	GM06990	blood:	n/a
15	chr7:64712896-64712946	SK-N-SH_RA	brain:	n/a
16	chr7:64712896-64712946	HCT-116	colon:	n/a
17	chr7:64712896-64712946	IMR90	lung:	fetal
18	chr7:64712896-64712946	SK-N-SH	brain:	n/a
19	chr7:64712896-64712946	AoSMC	blood vessel:	n/a
20	chr7:64712896-64712946	T-47D	breast:	n/a
21	chr7:64712896-64712946	Caco-2	colon:	n/a
22	chr7:64712896-64712946	LNCaP	prostate:	n/a
23	chr7:64712896-64712946	GM19239	blood:	n/a
24	chr7:64712896-64712946	Hepatocyte	liver:	n/a
25	chr7:64712896-64712946	AG04450	lung:	fetal
26	chr7:64712896-64712946	NHDF-neo	bronchial:	n/a
27	chr7:64712896-64712946	HL-60	blood:	n/a
28	chr7:64712896-64712946	MCF10A-Er-Src	breast:	n/a
29	chr7:64712896-64712946	MCF-7	breast:	n/a
30	chr7:64712896-64712946	HEK293	kidney:	embryo
31	chr7:64712896-64712946	HCF	heart:	n/a
32	chr7:64712896-64712946	PANC-1	pancreas:	n/a
33	chr7:64712896-64712946	ECC-1	luminal epithelium:	n/a
34	chr7:64712896-64712946	AG04449	skin:	fetal
35	chr7:64712896-64712946	GM12878	blood:	n/a
36	chr7:64712896-64712946	A549	lung:	n/a
37	chr7:64712896-64712946	Hela-S3	cervix:	n/a
38	chr7:64712896-64712946	BJ	skin:	n/a
39	chr7:64712896-64712946	SK-N-MC	brain:	n/a
40	chr7:64712896-64712946	GM12891	blood:	n/a
41	chr7:64712896-64712946	HAEpiC	amniotic membrane:	n/a
42	chr7:64712896-64712946	HRPEpiC	eye:	n/a
43	chr7:64712896-64712946	SKMC	muscle:	n/a
44	chr7:64712896-64712946	AG09319	gingival:	n/a
45	chr7:64712896-64712946	SAEC	small airway:	n/a
46	chr7:64712896-64712946	HPAEpiC	pulmonary alveolar:	n/a
47	chr7:64712896-64712946	NH-A	brain:	n/a
48	chr7:64712896-64712946	HCM	heart:	n/a
49	chr7:64712896-64712946	PrEC	prostate:	n/a
50	chr7:64712896-64712946	HUVEC	blood vessel:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64705886..64708857-chr7:64711322..64713690,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229064	TF binding region
ENSG00000229064	CpG island
ENSG00000229064	Chromatin interaction

Extended variants
information (count: 226 )
Associated
traits (count: 41 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10949982	0.81[AMR][1000 genomes]
rs10949983	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11769148	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773286	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12534769	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13221806	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13223327	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13227242	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13227243	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13227507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17710097	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17782771	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2419417	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28496606	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900858	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34739196	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3899200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718207	0.80[ASN][1000 genomes]
rs4718208	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4718210	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4718211	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs474341	0.82[ASN][1000 genomes]
rs58643803	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs593619	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs594456	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs635028	0.81[ASN][1000 genomes]
rs6460232	0.80[AMR][1000 genomes]
rs657560	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6948955	0.80[ASN][1000 genomes]
rs7778919	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796833	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7799516	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:194 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1033517	chr7:64443052-64942418	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv538893	chr7:64443052-64942418	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1034625	chr7:64456197-64850413	Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1019089	chr7:64456197-64874187	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1023699	chr7:64456197-64942418	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv517778	chr7:64462326-65326821	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv917231	chr7:64478253-65300317	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
10	esv34341	chr7:64478386-65012082	Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	esv2752166	chr7:64478386-65208605	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv1029796	chr7:64494934-65302696	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv916005	chr7:64499811-65012082	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv533081	chr7:64499945-65208605	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
15	esv3339156	chr7:64510176-65349050	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
16	nsv888286	chr7:64529883-64800432	Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv888287	chr7:64537992-64990806	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	esv2758117	chr7:64551274-65208605	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	esv2759534	chr7:64551274-65373851	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv427788	chr7:64551274-65390424	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
21	esv2752167	chr7:64557394-65012082	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	esv2752168	chr7:64557394-65012082	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	esv2752169	chr7:64557394-65012082	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv429768	chr7:64557394-65012082	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
25	nsv1021867	chr7:64565573-65012082	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
26	nsv1032570	chr7:64565573-65184339	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv1029343	chr7:64566957-65208605	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	nsv538894	chr7:64566957-65208605	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	nsv869856	chr7:64567013-65196403	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv607316	chr7:64582849-65208605	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
31	nsv469565	chr7:64590611-64813395	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv482415	chr7:64590611-64813395	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	esv2761084	chr7:64594065-64967767	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	esv2764020	chr7:64594065-65351820	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
35	nsv1032227	chr7:64594329-64917141	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	nsv1016806	chr7:64594329-64941887	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1015575	chr7:64594329-64947974	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1021106	chr7:64594329-64951818	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
39	nsv1016496	chr7:64594329-64960445	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
40	nsv1016392	chr7:64594329-64967755	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
41	nsv1020647	chr7:64594329-64997960	Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv1019148	chr7:64594329-65002671	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
43	nsv1017973	chr7:64594329-65012082	Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
44	nsv1018590	chr7:64594329-65012082	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
45	nsv1021410	chr7:64594329-65012082	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv1034505	chr7:64594329-65012082	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	nsv1029844	chr7:64594329-65094953	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1017365	chr7:64594329-65106792	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv1032262	chr7:64594329-65161364	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
50	nsv1023425	chr7:64594329-65162170	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:41)

SNP	Gene	Cis/trans	Tissue	Source
rs66671129	RP11-460N20.4	cis	Esophagus Muscularis	GTEx
rs66671129	RP11-460N20.5	cis	Thyroid	GTEx
rs66671129	RP11-460N20.5	cis	Stomach	GTEx
rs66671129	AC104057.1	cis	Esophagus Muscularis	GTEx
rs66671129	RP11-460N20.5	cis	Nerve Tibial	GTEx
rs66671129	RP11-797H7.3	cis	Thyroid	GTEx
rs66671129	INTS4L1	cis	Nerve Tibial	GTEx
rs66671129	RP11-460N20.4	cis	lung	GTEx
rs66671129	INTS4L1	cis	Skin Sun Exposed Lower leg	GTEx
rs66671129	RP11-797H7.3	cis	Heart Left Ventricle	GTEx
rs66671129	RP11-460N20.5	cis	Esophagus Mucosa	GTEx
rs66671129	RP11-460N20.5	cis	Artery Aorta	GTEx
rs66671129	RP11-460N20.5	cis	lung	GTEx
rs66671129	SEPHS1P1	cis	Nerve Tibial	GTEx
rs66671129	RP11-460N20.5	cis	Esophagus Muscularis	GTEx
rs66671129	RP11-667F9.1	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-460N20.4	cis	Artery Tibial	GTEx
rs66671129	INTS4L1	cis	Thyroid	GTEx
rs66671129	RP11-460N20.5	cis	Whole Blood	GTEx
rs66671129	RP11-797H7.3	cis	Nerve Tibial	GTEx
rs66671129	RP11-460N20.4	cis	Nerve Tibial	GTEx
rs66671129	RP11-797H7.3	cis	Artery Tibial	GTEx
rs66671129	RP11-460N20.5	cis	Artery Tibial	GTEx
rs66671129	ERV3-1	cis	Artery Aorta	GTEx
rs66671129	INTS4L1	cis	Esophagus Muscularis	GTEx
rs66671129	CCT6P3	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-460N20.5	cis	Skin Sun Exposed Lower leg	GTEx
rs66671129	RP11-797H7.5	cis	Thyroid	GTEx
rs66671129	RP11-797H7.5	cis	Heart Left Ventricle	GTEx
rs66671129	RP11-797H7.3	cis	lung	GTEx
rs66671129	RP11-797H7.3	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-460N20.4	cis	Esophagus Mucosa	GTEx
rs66671129	ZNF273	cis	Heart Left Ventricle	GTEx
rs66671129	RP11-797H7.5	cis	Adipose Subcutaneous	GTEx
rs66671129	AC104057.1	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-460N20.5	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-460N20.4	cis	Adipose Subcutaneous	GTEx
rs66671129	RP11-797H7.3	cis	Artery Aorta	GTEx
rs66671129	RP11-667F9.1	cis	Nerve Tibial	GTEx
rs66671129	RP11-797H7.3	cis	Skin Sun Exposed Lower leg	GTEx
rs66671129	RP11-797H7.5	cis	lung	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64710400-64713600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:64711000-64713400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:64711400-64713200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr7:64711400-64713200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:64711400-64713200	Active TSS	Fetal Brain Female	brain
6	chr7:64711400-64713400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr7:64711600-64713000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr7:64711600-64713200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:64711600-64713400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:64711600-64713400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:64711800-64713200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:64711800-64713200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr7:64711800-64713200	Active TSS	Brain Germinal Matrix	brain
14	chr7:64711800-64713400	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr7:64712000-64713000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:64712000-64713000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:64712000-64713000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:64712000-64713000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:64712000-64713000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
20	chr7:64712000-64713000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
21	chr7:64712000-64713000	Active TSS	Left Ventricle	heart
22	chr7:64712000-64713000	Active TSS	Lung	lung
23	chr7:64712000-64713000	Active TSS	Rectal Smooth Muscle	rectum
24	chr7:64712000-64713000	Active TSS	Right Atrium	heart
25	chr7:64712000-64713000	Active TSS	HSMMtube	muscle
26	chr7:64712000-64713200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:64712000-64713200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:64712000-64713200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:64712000-64713200	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr7:64712000-64713200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:64712000-64713200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr7:64712000-64713200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:64712000-64713200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:64712000-64713200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:64712000-64713200	Active TSS	Brain Angular Gyrus	brain
36	chr7:64712000-64713200	Active TSS	Brain Anterior Caudate	brain
37	chr7:64712000-64713200	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr7:64712000-64713200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:64712000-64713200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
40	chr7:64712000-64713200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
41	chr7:64712000-64713200	Active TSS	Fetal Kidney	kidney
42	chr7:64712000-64713200	Active TSS	Ovary	ovary
43	chr7:64712000-64713200	Active TSS	Right Ventricle	heart
44	chr7:64712000-64713200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
45	chr7:64712000-64713200	Active TSS	A549	lung
46	chr7:64712000-64713200	Active TSS	Osteobl	bone
47	chr7:64712200-64713000	Flanking Active TSS	Primary B cells from peripheral blood	blood
48	chr7:64712200-64713000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:64712200-64713000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:64712200-64713000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--

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