Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs513580	0.86[EUR][1000 genomes]
rs522066	0.86[EUR][1000 genomes]
rs529489	0.86[EUR][1000 genomes]
rs538289	0.86[EUR][1000 genomes]
rs576420	0.89[ASN][1000 genomes]
rs578343	0.89[ASN][1000 genomes]
rs584733	0.84[ASN][1000 genomes]
rs597493	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630537	0.89[ASN][1000 genomes]
rs643298	0.94[ASN][1000 genomes]
rs654730	0.92[ASN][1000 genomes]
rs7770088	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143049800-143073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143050000-143058200	Weak transcription	NHEK	skin
3	chr6:143050000-143061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143050400-143058000	Weak transcription	Pancreas	Pancrea
5	chr6:143050600-143058600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:143050800-143058600	Weak transcription	NHDF-Ad	bronchial
7	chr6:143054200-143072800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:143056000-143057400	Enhancers	Hela-S3	cervix
9	chr6:143056200-143057000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:143056200-143057000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:143056200-143057400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:143056200-143057400	Enhancers	HUVEC	blood vessel
13	chr6:143056400-143057000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:143056600-143056800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:143056600-143057000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:143056600-143057000	Enhancers	Fetal Lung	lung
17	chr6:143056600-143057200	Enhancers	Placenta	Placenta
18	chr6:143056600-143057400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:143056600-143057400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:143056600-143057400	Enhancers	Esophagus	oesophagus

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