Variant report

Variant	rs7770088
Chromosome Location	chr6:143054139-143054140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs657775	0.84[AFR][1000 genomes]
rs6933793	0.89[EUR][1000 genomes]
rs7762241	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496445	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143049400-143056600	Weak transcription	Esophagus	oesophagus
2	chr6:143049800-143073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:143050000-143058200	Weak transcription	NHEK	skin
4	chr6:143050000-143061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143050400-143058000	Weak transcription	Pancreas	Pancrea
6	chr6:143050600-143058600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:143050800-143058600	Weak transcription	NHDF-Ad	bronchial
8	chr6:143051200-143056600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:143053000-143056600	Weak transcription	Placenta	Placenta
10	chr6:143053200-143054400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:143053200-143054400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:143053800-143054200	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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