Variant report

Variant	rs9496445
Chromosome Location	chr6:143047898-143047899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs513580	0.86[AFR][1000 genomes]
rs522066	0.88[AFR][1000 genomes]
rs529489	0.86[AFR][1000 genomes]
rs538289	0.86[AFR][1000 genomes]
rs7762241	0.83[EUR][1000 genomes]
rs7770088	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143040400-143049200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143043200-143050000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:143044400-143049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:143044400-143049200	Weak transcription	HMEC	breast
5	chr6:143044600-143049600	Weak transcription	GM12878-XiMat	blood
6	chr6:143045200-143048400	Weak transcription	Fetal Brain Male	brain
7	chr6:143045800-143048800	Enhancers	Placenta	Placenta
8	chr6:143046200-143048600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:143046400-143048000	Weak transcription	Spleen	Spleen
10	chr6:143046400-143048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:143046400-143049200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:143046400-143049400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:143046400-143051000	Weak transcription	Aorta	Aorta
14	chr6:143046600-143048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:143046600-143049000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:143046600-143049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143046600-143049400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:143046600-143049400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:143046600-143049600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:143046600-143049600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:143047800-143048400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:143047800-143048400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:143047800-143048400	Enhancers	NH-A	brain
24	chr6:143047800-143049400	Enhancers	Esophagus	oesophagus

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