The 2.0 version of rSNPBase

Variant report

Variant rs6580385
Chromosome Location chr5:145152529-145152530
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145105400-145179000 Weak transcription Pancreas Pancrea
2 chr5:145109400-145194400 Weak transcription Colonic Mucosa Colon
3 chr5:145111400-145166800 Weak transcription K562 blood
4 chr5:145114000-145163400 Weak transcription Small Intestine intestine
5 chr5:145126800-145155000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:145131000-145156800 Weak transcription Gastric stomach
7 chr5:145133000-145154800 Weak transcription Fetal Lung lung
8 chr5:145133800-145154600 Weak transcription Osteobl bone
9 chr5:145137800-145154400 Weak transcription Placenta Amnion Placenta Amnion
10 chr5:145138000-145157800 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr5:145139000-145165400 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr5:145140000-145157800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr5:145140400-145157200 Weak transcription Left Ventricle heart
14 chr5:145140600-145153800 Weak transcription Ovary ovary
15 chr5:145140600-145156000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:145141200-145194400 Weak transcription Stomach Smooth Muscle stomach
17 chr5:145141600-145155600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr5:145142400-145162400 Weak transcription Rectal Smooth Muscle rectum
19 chr5:145144200-145155200 Weak transcription HUVEC blood vessel
20 chr5:145144200-145156800 Weak transcription Right Ventricle heart
21 chr5:145144800-145154800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:145147200-145154800 Weak transcription Adipose Nuclei Adipose
23 chr5:145147200-145155000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr5:145147400-145153200 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr5:145147400-145153800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr5:145147400-145155000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr5:145147400-145155000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr5:145147400-145155000 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr5:145147400-145156000 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr5:145147400-145157000 Weak transcription Fetal Stomach stomach
31 chr5:145147400-145161800 Weak transcription Lung lung
32 chr5:145147600-145153000 Weak transcription Primary hematopoietic stem cells blood
33 chr5:145147600-145156800 Weak transcription Fetal Intestine Small intestine
34 chr5:145148200-145154600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr5:145148400-145154800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr5:145148800-145166600 Weak transcription Fetal Heart heart
37 chr5:145150200-145156800 Weak transcription Duodenum Mucosa Duodenum
38 chr5:145151400-145153800 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr5:145151400-145154200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:145152000-145154400 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr5:145152000-145155400 Strong transcription Fetal Intestine Large intestine
42 chr5:145152000-145167200 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr5:145152200-145171000 Weak transcription Stomach Mucosa stomach
44 chr5:145152400-145153800 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015