Variant report

Variant	rs7737990
Chromosome Location	chr5:145160141-145160142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10038010	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359479	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549899	0.93[AMR][1000 genomes]
rs17103741	0.91[EUR][1000 genomes]
rs6580385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580387	0.91[EUR][1000 genomes]
rs6888614	0.81[EUR][1000 genomes]
rs7725181	1.00[EUR][1000 genomes]
rs990384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145111400-145166800	Weak transcription	K562	blood
4	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
5	chr5:145139000-145165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:145142400-145162400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:145147400-145161800	Weak transcription	Lung	lung
9	chr5:145148800-145166600	Weak transcription	Fetal Heart	heart
10	chr5:145152000-145167200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:145152200-145171000	Weak transcription	Stomach Mucosa	stomach
12	chr5:145154600-145166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:145154600-145169600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:145155400-145167200	Weak transcription	Right Atrium	heart
15	chr5:145156000-145160400	Weak transcription	Brain Substantia Nigra	brain
16	chr5:145156000-145171400	Weak transcription	Aorta	Aorta
17	chr5:145156200-145160600	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:145156400-145160600	Weak transcription	HUVEC	blood vessel
19	chr5:145156400-145166000	Weak transcription	Fetal Lung	lung
20	chr5:145156400-145167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:145156800-145160400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:145157000-145161400	Weak transcription	HepG2	liver
23	chr5:145157000-145167000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:145157000-145167800	Weak transcription	NH-A	brain
25	chr5:145157200-145161000	Weak transcription	Adipose Nuclei	Adipose
26	chr5:145157200-145161400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:145157200-145161600	Weak transcription	Ovary	ovary
28	chr5:145157200-145166800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:145157400-145167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:145157600-145160600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr5:145157600-145167200	Weak transcription	Left Ventricle	heart
32	chr5:145157800-145160400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:145158400-145160600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:145158400-145160600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr5:145158400-145161400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:145158400-145164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:145158400-145167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:145158400-145171400	Weak transcription	Fetal Stomach	stomach
39	chr5:145158400-145176800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:145158400-145177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:145158400-145179000	Weak transcription	Gastric	stomach
42	chr5:145158400-145196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:145158400-145207000	Weak transcription	Esophagus	oesophagus
44	chr5:145158600-145161400	Weak transcription	Fetal Intestine Large	intestine
45	chr5:145158600-145161600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:145158600-145161800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:145158600-145161800	Weak transcription	Fetal Intestine Small	intestine
48	chr5:145158600-145165200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:145158600-145165400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr5:145158600-145165400	Weak transcription	Rectal Mucosa Donor 29	rectum

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