Variant report

Variant	rs6580496
Chromosome Location	chr5:147071368-147071369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10074880	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10463280	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432827	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432828	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432829	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432830	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1594659	0.83[EUR][1000 genomes]
rs17107216	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1835943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35604260	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4476710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55843547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56920672	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58854348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67302609	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6869450	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895574	0.90[ASN][1000 genomes]
rs7713466	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720860	0.85[EUR][1000 genomes]
rs7727216	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731462	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:147060400-147072600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:147064000-147071400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:147066600-147071400	Enhancers	Colon Smooth Muscle	Colon
10	chr5:147067800-147071400	Enhancers	Brain Hippocampus Middle	brain
11	chr5:147068400-147074600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:147068600-147073400	Weak transcription	Brain Germinal Matrix	brain
13	chr5:147068800-147073800	Weak transcription	Fetal Brain Female	brain
14	chr5:147069400-147072200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:147069400-147074200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:147069800-147071800	Enhancers	Fetal Heart	heart
17	chr5:147069800-147073400	Weak transcription	Fetal Brain Male	brain
18	chr5:147069800-147074000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:147069800-147074200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:147070000-147071600	Enhancers	Ovary	ovary
21	chr5:147070000-147073800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:147070000-147074800	Weak transcription	Brain Angular Gyrus	brain
23	chr5:147070200-147071400	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr5:147070400-147071400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:147070400-147071400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:147070400-147071400	Enhancers	Brain Anterior Caudate	brain
27	chr5:147070400-147071600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:147070400-147071600	Enhancers	Fetal Kidney	kidney
29	chr5:147070400-147071600	Enhancers	Fetal Stomach	stomach
30	chr5:147070400-147071600	Enhancers	Rectal Smooth Muscle	rectum
31	chr5:147070600-147071800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:147070800-147071400	Enhancers	Fetal Lung	lung
33	chr5:147071000-147071400	Enhancers	Right Atrium	heart
34	chr5:147071200-147071600	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:147071200-147071800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:147071200-147072000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr5:147071200-147073600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:147071200-147073800	Weak transcription	Brain Substantia Nigra	brain

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