Variant report

Variant	rs6869450
Chromosome Location	chr5:147076613-147076614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10074880	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10463280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432827	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432830	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1594659	0.83[EUR][1000 genomes]
rs17107216	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1835943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35604260	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4476710	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55843547	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56920672	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58854348	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580496	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580497	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67302609	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878916	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895574	0.87[ASN][1000 genomes]
rs7713466	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720860	0.85[EUR][1000 genomes]
rs7727216	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7731462	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
4	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:147071600-147077000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:147071600-147077000	Weak transcription	Fetal Stomach	stomach
7	chr5:147071800-147076800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:147073200-147077000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:147074400-147077000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:147074600-147081000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:147075200-147077000	Weak transcription	Brain Angular Gyrus	brain
12	chr5:147075200-147077000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:147075200-147077000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:147075800-147077000	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:147076000-147076800	Weak transcription	Fetal Brain Female	brain
16	chr5:147076000-147078000	Weak transcription	Gastric	stomach
17	chr5:147076400-147077200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr5:147076600-147077600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:147076600-147077800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr5:147076600-147078000	ZNF genes & repeats	Brain Substantia Nigra	brain
21	chr5:147076600-147078400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr5:147076600-147079000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:147076600-147079600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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