Variant report
| Variant | rs6580849 |
|---|---|
| Chromosome Location | chr12:39303639-39303640 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10444553 | 1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10876208 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11169482 | 0.89[JPT][hapmap] |
| rs11169518 | 1.00[JPT][hapmap] |
| rs11169519 | 1.00[JPT][hapmap] |
| rs11169535 | 1.00[JPT][hapmap] |
| rs11169768 | 1.00[JPT][hapmap] |
| rs1400280 | 1.00[JPT][hapmap];0.82[YRI][hapmap] |
| rs1400285 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1403521 | 1.00[JPT][hapmap] |
| rs1516558 | 1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1523118 | 1.00[JPT][hapmap] |
| rs1586373 | 1.00[JPT][hapmap] |
| rs2138543 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2388172 | 1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3803020 | 1.00[JPT][hapmap] |
| rs3887436 | 1.00[JPT][hapmap] |
| rs4384412 | 1.00[JPT][hapmap] |
| rs4595586 | 1.00[JPT][hapmap] |
| rs7315271 | 0.89[JPT][hapmap] |
| rs7962363 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7970097 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047623 | chr12:39187817-39539939 | Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv3389115 | chr12:39221256-39448458 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv899009 | chr12:39284077-39441096 | Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:39301400-39305000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
