Variant report

Variant	rs7970097
Chromosome Location	chr12:39302247-39302248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10444553	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10876208	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11169482	0.90[JPT][hapmap]
rs11169518	1.00[JPT][hapmap]
rs11169519	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11169535	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11169768	1.00[JPT][hapmap];0.81[LWK][hapmap];0.81[TSI][hapmap]
rs11169807	0.92[CEU][hapmap];0.91[TSI][hapmap]
rs12322112	1.00[YRI][hapmap]
rs1400280	0.92[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs1400285	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1403521	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs1516558	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1523118	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs1586373	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2138543	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2388172	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3803020	0.88[CEU][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs3887436	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4384412	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4595586	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs56149694	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6580849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7315271	0.90[JPT][hapmap]
rs7962363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39301400-39305000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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