Variant report

Variant	rs6582497
Chromosome Location	chr12:44476332-44476333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10047523	0.83[EUR][1000 genomes]
rs1032886	0.88[EUR][1000 genomes]
rs10506235	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10506236	0.91[EUR][1000 genomes]
rs10506237	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10506239	0.91[EUR][1000 genomes]
rs10506240	0.87[EUR][1000 genomes]
rs10506241	0.84[EUR][1000 genomes]
rs10880622	0.88[EUR][1000 genomes]
rs10880623	0.88[EUR][1000 genomes]
rs10880628	0.82[EUR][1000 genomes]
rs1115423	0.92[EUR][1000 genomes]
rs11182423	0.88[EUR][1000 genomes]
rs11182430	0.87[EUR][1000 genomes]
rs11182431	0.85[EUR][1000 genomes]
rs11182432	0.85[EUR][1000 genomes]
rs11182453	0.84[EUR][1000 genomes]
rs11182455	0.83[EUR][1000 genomes]
rs1155808	0.85[EUR][1000 genomes]
rs11609283	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11609568	0.83[EUR][1000 genomes]
rs11610433	0.83[EUR][1000 genomes]
rs11612257	0.84[EUR][1000 genomes]
rs11612946	0.91[EUR][1000 genomes]
rs11613064	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11613444	0.84[EUR][1000 genomes]
rs11613902	0.88[EUR][1000 genomes]
rs11615473	0.83[EUR][1000 genomes]
rs1168078	0.88[EUR][1000 genomes]
rs11830719	0.84[EUR][1000 genomes]
rs11830768	0.82[ASN][1000 genomes]
rs11832219	0.83[EUR][1000 genomes]
rs11832828	0.84[EUR][1000 genomes]
rs11834090	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11834667	0.88[EUR][1000 genomes]
rs11835507	0.83[EUR][1000 genomes]
rs11838118	0.82[ASN][1000 genomes]
rs12099982	0.88[EUR][1000 genomes]
rs12297689	0.84[EUR][1000 genomes]
rs12297933	0.88[EUR][1000 genomes]
rs12299030	0.83[EUR][1000 genomes]
rs12299937	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12300793	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12307454	0.88[EUR][1000 genomes]
rs12307560	0.83[EUR][1000 genomes]
rs12308449	0.84[EUR][1000 genomes]
rs12308508	0.85[EUR][1000 genomes]
rs12309639	0.83[EUR][1000 genomes]
rs12315961	0.88[EUR][1000 genomes]
rs12319009	0.88[EUR][1000 genomes]
rs1352935	0.90[EUR][1000 genomes]
rs1527316	0.84[EUR][1000 genomes]
rs1643429	0.85[EUR][1000 genomes]
rs1643431	0.83[EUR][1000 genomes]
rs17094062	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17094063	0.90[EUR][1000 genomes]
rs17094072	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17094092	0.88[EUR][1000 genomes]
rs17094117	0.84[EUR][1000 genomes]
rs17094121	0.91[EUR][1000 genomes]
rs17094136	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17094169	0.95[EUR][1000 genomes]
rs17094183	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17094194	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17094226	0.86[EUR][1000 genomes]
rs17094228	0.87[EUR][1000 genomes]
rs17094231	0.84[EUR][1000 genomes]
rs17094242	0.87[EUR][1000 genomes]
rs17094260	0.84[EUR][1000 genomes]
rs17094263	0.84[EUR][1000 genomes]
rs17094282	0.83[EUR][1000 genomes]
rs17094291	0.84[EUR][1000 genomes]
rs17094292	0.84[EUR][1000 genomes]
rs17094298	0.84[EUR][1000 genomes]
rs17094299	0.84[EUR][1000 genomes]
rs17094300	0.84[EUR][1000 genomes]
rs17094304	0.84[EUR][1000 genomes]
rs17094313	0.84[EUR][1000 genomes]
rs17094322	0.84[EUR][1000 genomes]
rs17094323	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17094325	0.84[EUR][1000 genomes]
rs17094328	0.84[EUR][1000 genomes]
rs17094330	0.84[EUR][1000 genomes]
rs17094336	0.84[EUR][1000 genomes]
rs17094348	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17121305	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17121310	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1851099	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2032782	0.83[EUR][1000 genomes]
rs2062953	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2062954	0.88[EUR][1000 genomes]
rs2174508	0.88[EUR][1000 genomes]
rs2638853	0.90[EUR][1000 genomes]
rs2657576	0.80[EUR][1000 genomes]
rs28397962	0.84[EUR][1000 genomes]
rs28538835	0.84[EUR][1000 genomes]
rs55633842	0.84[EUR][1000 genomes]
rs55645887	0.84[EUR][1000 genomes]
rs55649839	0.86[EUR][1000 genomes]
rs55747421	0.84[EUR][1000 genomes]
rs55782485	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55874183	0.83[EUR][1000 genomes]
rs55934849	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55950371	0.89[EUR][1000 genomes]
rs55977905	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55991202	0.84[EUR][1000 genomes]
rs55999021	0.88[EUR][1000 genomes]
rs56134810	0.82[EUR][1000 genomes]
rs56192803	0.84[EUR][1000 genomes]
rs56218625	0.91[EUR][1000 genomes]
rs56339470	0.86[EUR][1000 genomes]
rs56973281	0.82[ASN][1000 genomes]
rs57010132	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57094207	0.82[EUR][1000 genomes]
rs58206004	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58450697	0.82[EUR][1000 genomes]
rs59136483	0.84[EUR][1000 genomes]
rs59152420	0.85[EUR][1000 genomes]
rs59375742	0.84[EUR][1000 genomes]
rs59404283	0.82[ASN][1000 genomes]
rs59477802	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59628873	0.88[EUR][1000 genomes]
rs59957474	0.84[EUR][1000 genomes]
rs60008417	0.81[EUR][1000 genomes]
rs60461380	0.84[EUR][1000 genomes]
rs60985254	0.82[ASN][1000 genomes]
rs60995491	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61228557	0.84[EUR][1000 genomes]
rs61629163	0.92[EUR][1000 genomes]
rs6582498	0.85[EUR][1000 genomes]
rs66970043	0.88[EUR][1000 genomes]
rs67713366	0.90[EUR][1000 genomes]
rs68049983	0.88[EUR][1000 genomes]
rs7132031	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7137469	0.83[EUR][1000 genomes]
rs7137787	0.84[EUR][1000 genomes]
rs7139362	0.91[EUR][1000 genomes]
rs7297563	0.84[EUR][1000 genomes]
rs7305976	0.84[EUR][1000 genomes]
rs7306362	0.86[EUR][1000 genomes]
rs7306647	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7308476	0.84[EUR][1000 genomes]
rs73093458	0.91[EUR][1000 genomes]
rs73093474	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73094803	0.96[EUR][1000 genomes]
rs73099009	0.90[EUR][1000 genomes]
rs73099011	0.90[EUR][1000 genomes]
rs73099027	0.87[EUR][1000 genomes]
rs73100803	0.87[EUR][1000 genomes]
rs73100817	0.81[EUR][1000 genomes]
rs73100829	0.86[EUR][1000 genomes]
rs73100834	0.81[EUR][1000 genomes]
rs73100841	0.86[EUR][1000 genomes]
rs73100848	0.84[EUR][1000 genomes]
rs73102910	0.83[EUR][1000 genomes]
rs73102919	0.84[EUR][1000 genomes]
rs73102924	0.84[EUR][1000 genomes]
rs73102925	0.84[EUR][1000 genomes]
rs73102927	0.84[EUR][1000 genomes]
rs73102932	0.84[EUR][1000 genomes]
rs73102938	0.84[EUR][1000 genomes]
rs7310881	0.87[EUR][1000 genomes]
rs7311714	0.84[EUR][1000 genomes]
rs7312930	0.85[EUR][1000 genomes]
rs7315208	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs73272204	0.82[ASN][1000 genomes]
rs73272295	0.82[ASN][1000 genomes]
rs73274135	0.82[ASN][1000 genomes]
rs73288033	0.82[ASN][1000 genomes]
rs73288050	0.88[EUR][1000 genomes]
rs73288071	0.82[ASN][1000 genomes]
rs73288083	0.82[ASN][1000 genomes]
rs73290241	0.82[ASN][1000 genomes]
rs73290243	0.82[ASN][1000 genomes]
rs73290244	0.82[ASN][1000 genomes]
rs73290245	0.82[ASN][1000 genomes]
rs73290254	0.82[ASN][1000 genomes]
rs73290256	0.82[ASN][1000 genomes]
rs73290257	0.82[ASN][1000 genomes]
rs7954128	0.82[ASN][1000 genomes]
rs7954216	0.87[EUR][1000 genomes]
rs7961536	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7961986	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7967957	0.90[EUR][1000 genomes]
rs7968777	0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7969885	0.88[EUR][1000 genomes]
rs7971340	0.93[EUR][1000 genomes]
rs7976652	0.83[EUR][1000 genomes]
rs7977482	0.88[EUR][1000 genomes]
rs7980383	0.88[EUR][1000 genomes]
rs963095	0.89[EUR][1000 genomes]
rs9738149	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522314	chr12:44471709-44487061	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44458400-44482200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44467600-44482600	Weak transcription	Left Ventricle	heart
3	chr12:44469400-44495600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44471200-44482400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:44471400-44482400	Weak transcription	Aorta	Aorta

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