Variant report

Variant	rs73093474
Chromosome Location	chr12:44511120-44511121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs10047523	0.86[EUR][1000 genomes]
rs1032886	0.92[EUR][1000 genomes]
rs10506235	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506236	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506237	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506239	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506240	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506241	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506242	1.00[ASN][1000 genomes]
rs10880622	0.92[EUR][1000 genomes]
rs10880623	0.92[EUR][1000 genomes]
rs10880628	0.85[EUR][1000 genomes]
rs1115423	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182423	0.92[EUR][1000 genomes]
rs11182430	0.90[EUR][1000 genomes]
rs11182431	0.89[EUR][1000 genomes]
rs11182432	0.89[EUR][1000 genomes]
rs11182453	0.87[EUR][1000 genomes]
rs11182455	0.86[EUR][1000 genomes]
rs1155808	0.89[EUR][1000 genomes]
rs11609283	0.88[EUR][1000 genomes]
rs11609304	1.00[ASN][1000 genomes]
rs11609568	0.87[EUR][1000 genomes]
rs11609727	1.00[ASN][1000 genomes]
rs11610433	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610994	1.00[ASN][1000 genomes]
rs11611103	1.00[ASN][1000 genomes]
rs11612076	1.00[ASN][1000 genomes]
rs11612257	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612946	0.95[EUR][1000 genomes]
rs11613064	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613444	0.88[EUR][1000 genomes]
rs11613902	0.92[EUR][1000 genomes]
rs11613956	1.00[ASN][1000 genomes]
rs11615473	0.86[EUR][1000 genomes]
rs11615732	1.00[ASN][1000 genomes]
rs1168078	0.92[EUR][1000 genomes]
rs11830719	0.88[EUR][1000 genomes]
rs11832219	0.86[EUR][1000 genomes]
rs11832828	0.88[EUR][1000 genomes]
rs11834667	0.92[EUR][1000 genomes]
rs11835507	0.86[EUR][1000 genomes]
rs12099982	0.92[EUR][1000 genomes]
rs12297689	0.88[EUR][1000 genomes]
rs12297754	0.82[EUR][1000 genomes]
rs12297933	0.92[EUR][1000 genomes]
rs12299030	0.86[EUR][1000 genomes]
rs12299937	0.84[EUR][1000 genomes]
rs12300793	0.89[EUR][1000 genomes]
rs12307454	0.92[EUR][1000 genomes]
rs12307560	0.86[EUR][1000 genomes]
rs12308449	0.88[EUR][1000 genomes]
rs12308508	0.89[EUR][1000 genomes]
rs12308569	0.82[EUR][1000 genomes]
rs12309639	0.86[EUR][1000 genomes]
rs12314470	0.81[EUR][1000 genomes]
rs12315961	0.92[EUR][1000 genomes]
rs12319009	0.92[EUR][1000 genomes]
rs1352935	0.92[EUR][1000 genomes]
rs1527316	0.88[EUR][1000 genomes]
rs1643429	0.89[EUR][1000 genomes]
rs1643431	0.86[EUR][1000 genomes]
rs17094062	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094063	0.92[EUR][1000 genomes]
rs17094092	0.92[EUR][1000 genomes]
rs17094117	0.88[EUR][1000 genomes]
rs17094121	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094169	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094183	0.88[EUR][1000 genomes]
rs17094226	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094228	0.91[EUR][1000 genomes]
rs17094231	0.88[EUR][1000 genomes]
rs17094235	0.84[EUR][1000 genomes]
rs17094242	0.91[EUR][1000 genomes]
rs17094260	0.88[EUR][1000 genomes]
rs17094263	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094282	0.87[EUR][1000 genomes]
rs17094291	0.88[EUR][1000 genomes]
rs17094292	0.88[EUR][1000 genomes]
rs17094298	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094299	0.88[EUR][1000 genomes]
rs17094300	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094304	0.88[EUR][1000 genomes]
rs17094313	0.88[EUR][1000 genomes]
rs17094322	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094323	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094325	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094328	0.88[EUR][1000 genomes]
rs17094330	0.88[EUR][1000 genomes]
rs17094336	0.88[EUR][1000 genomes]
rs17121305	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121310	0.89[EUR][1000 genomes]
rs2032782	0.86[EUR][1000 genomes]
rs2062954	0.92[EUR][1000 genomes]
rs2112147	0.82[EUR][1000 genomes]
rs2174508	0.92[EUR][1000 genomes]
rs2407818	1.00[ASN][1000 genomes]
rs2638853	0.92[EUR][1000 genomes]
rs2657576	0.84[EUR][1000 genomes]
rs28397962	0.88[EUR][1000 genomes]
rs28538835	0.88[EUR][1000 genomes]
rs28838075	0.82[EUR][1000 genomes]
rs34378333	1.00[ASN][1000 genomes]
rs34621645	1.00[ASN][1000 genomes]
rs35156535	1.00[ASN][1000 genomes]
rs35503487	1.00[ASN][1000 genomes]
rs55633842	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55645887	0.88[EUR][1000 genomes]
rs55649839	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55747421	0.88[EUR][1000 genomes]
rs55782485	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55874183	0.87[EUR][1000 genomes]
rs55934849	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55950371	0.85[EUR][1000 genomes]
rs55977905	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55991202	0.88[EUR][1000 genomes]
rs55999021	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56134810	0.86[EUR][1000 genomes]
rs56192803	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218625	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56339470	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57010132	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57094207	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57907832	0.84[EUR][1000 genomes]
rs58206004	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58450697	0.86[EUR][1000 genomes]
rs59136483	0.88[EUR][1000 genomes]
rs59152420	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59375742	0.88[EUR][1000 genomes]
rs59477802	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59628873	0.92[EUR][1000 genomes]
rs59704299	0.83[EUR][1000 genomes]
rs59957474	0.88[EUR][1000 genomes]
rs60008417	0.85[EUR][1000 genomes]
rs60461380	0.88[EUR][1000 genomes]
rs60939199	0.83[AMR][1000 genomes]
rs60995491	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61228557	0.88[EUR][1000 genomes]
rs61629163	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61690882	0.84[EUR][1000 genomes]
rs6582497	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6582498	0.89[EUR][1000 genomes]
rs66970043	0.92[EUR][1000 genomes]
rs67184817	0.82[EUR][1000 genomes]
rs67713366	0.92[EUR][1000 genomes]
rs68049983	0.92[EUR][1000 genomes]
rs7137469	0.86[EUR][1000 genomes]
rs7137787	0.88[EUR][1000 genomes]
rs7139362	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7295832	0.82[EUR][1000 genomes]
rs7297563	0.88[EUR][1000 genomes]
rs7305976	0.87[EUR][1000 genomes]
rs7306362	0.90[EUR][1000 genomes]
rs7306647	0.88[EUR][1000 genomes]
rs7308476	0.88[EUR][1000 genomes]
rs73093458	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094803	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73099009	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73099011	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73099027	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100803	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100817	0.85[EUR][1000 genomes]
rs73100825	0.84[EUR][1000 genomes]
rs73100829	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100834	0.85[EUR][1000 genomes]
rs73100841	0.90[EUR][1000 genomes]
rs73100848	0.88[EUR][1000 genomes]
rs73102910	0.87[EUR][1000 genomes]
rs73102919	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102924	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102925	0.88[EUR][1000 genomes]
rs73102927	0.88[EUR][1000 genomes]
rs73102932	0.88[EUR][1000 genomes]
rs73102937	0.83[EUR][1000 genomes]
rs73102938	0.88[EUR][1000 genomes]
rs7310881	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311714	0.88[EUR][1000 genomes]
rs7312930	0.89[EUR][1000 genomes]
rs7313269	0.82[EUR][1000 genomes]
rs7315208	0.89[EUR][1000 genomes]
rs7316737	0.82[EUR][1000 genomes]
rs73274154	1.00[ASN][1000 genomes]
rs73274169	1.00[ASN][1000 genomes]
rs73288050	0.92[EUR][1000 genomes]
rs7954216	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961974	0.84[EUR][1000 genomes]
rs7967957	0.92[EUR][1000 genomes]
rs7968777	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7969885	0.92[EUR][1000 genomes]
rs7971340	0.89[EUR][1000 genomes]
rs7976652	0.86[EUR][1000 genomes]
rs7977482	0.92[EUR][1000 genomes]
rs7980383	0.92[EUR][1000 genomes]
rs860867	0.82[EUR][1000 genomes]
rs963095	0.93[EUR][1000 genomes]
rs9738149	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44508600-44512200	Weak transcription	Fetal Brain Female	brain
2	chr12:44509200-44511200	Weak transcription	Pancreas	Pancrea
3	chr12:44509800-44512600	Weak transcription	Fetal Brain Male	brain
4	chr12:44510600-44511600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:44510800-44511400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44510800-44511400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:44510800-44511600	Enhancers	HSMMtube	muscle
8	chr12:44510800-44511600	Enhancers	NHEK	skin
9	chr12:44510800-44531400	Weak transcription	Psoas Muscle	Psoas
10	chr12:44511000-44511800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links