Variant report

Variant	rs11609304
Chromosome Location	chr12:44670125-44670126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10506235	1.00[ASN][1000 genomes]
rs10506236	1.00[ASN][1000 genomes]
rs10506237	1.00[ASN][1000 genomes]
rs10506239	1.00[ASN][1000 genomes]
rs10506240	1.00[ASN][1000 genomes]
rs10506241	1.00[ASN][1000 genomes]
rs10506242	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115423	1.00[ASN][1000 genomes]
rs11182449	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11609727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610433	1.00[ASN][1000 genomes]
rs11610994	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612076	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612257	1.00[ASN][1000 genomes]
rs11613064	1.00[ASN][1000 genomes]
rs11613956	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094062	1.00[ASN][1000 genomes]
rs17094121	1.00[ASN][1000 genomes]
rs17094169	1.00[ASN][1000 genomes]
rs17094226	1.00[ASN][1000 genomes]
rs17094263	1.00[ASN][1000 genomes]
rs17094298	1.00[ASN][1000 genomes]
rs17094300	1.00[ASN][1000 genomes]
rs17094322	1.00[ASN][1000 genomes]
rs17094323	1.00[ASN][1000 genomes]
rs17094325	1.00[ASN][1000 genomes]
rs17094352	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2407818	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28799901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34378333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621645	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35156535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35503487	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633842	1.00[ASN][1000 genomes]
rs55649839	1.00[ASN][1000 genomes]
rs56192803	1.00[ASN][1000 genomes]
rs56218625	1.00[ASN][1000 genomes]
rs56339470	1.00[ASN][1000 genomes]
rs57010132	1.00[ASN][1000 genomes]
rs57094207	1.00[ASN][1000 genomes]
rs57655063	0.86[AFR][1000 genomes]
rs58206004	1.00[ASN][1000 genomes]
rs59477802	1.00[ASN][1000 genomes]
rs59594716	0.91[AFR][1000 genomes]
rs60379168	0.86[AFR][1000 genomes]
rs60995491	1.00[ASN][1000 genomes]
rs61628384	0.91[AFR][1000 genomes]
rs61629163	1.00[ASN][1000 genomes]
rs7139362	1.00[ASN][1000 genomes]
rs73093458	1.00[ASN][1000 genomes]
rs73093474	1.00[ASN][1000 genomes]
rs73094803	1.00[ASN][1000 genomes]
rs73099009	1.00[ASN][1000 genomes]
rs73099011	1.00[ASN][1000 genomes]
rs73099027	1.00[ASN][1000 genomes]
rs73100803	1.00[ASN][1000 genomes]
rs73100829	1.00[ASN][1000 genomes]
rs73102919	1.00[ASN][1000 genomes]
rs73102924	1.00[ASN][1000 genomes]
rs7310881	1.00[ASN][1000 genomes]
rs73272261	0.80[AFR][1000 genomes]
rs73272262	0.83[AFR][1000 genomes]
rs73272268	0.86[AFR][1000 genomes]
rs73272290	0.86[AFR][1000 genomes]
rs73272298	0.86[AFR][1000 genomes]
rs73274103	0.86[AFR][1000 genomes]
rs73274106	0.91[AFR][1000 genomes]
rs73274124	0.91[AFR][1000 genomes]
rs73274137	0.91[EUR][1000 genomes]
rs73274148	0.91[AFR][1000 genomes]
rs73274154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73274169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288072	0.80[AFR][1000 genomes]
rs73288099	0.80[AFR][1000 genomes]
rs73290215	0.86[AFR][1000 genomes]
rs73290233	0.86[AFR][1000 genomes]
rs73290247	0.86[AFR][1000 genomes]
rs73290252	0.86[AFR][1000 genomes]
rs73290263	0.86[AFR][1000 genomes]
rs73290283	0.86[AFR][1000 genomes]
rs73290288	0.86[AFR][1000 genomes]
rs7954216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44654200-44679400	Weak transcription	Pancreas	Pancrea
2	chr12:44658400-44671800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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