Variant report

Variant	rs61628384
Chromosome Location	chr12:44653869-44653870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11609304	0.91[AFR][1000 genomes]
rs11609727	0.91[AFR][1000 genomes]
rs11612076	0.91[AFR][1000 genomes]
rs28799901	0.84[AFR][1000 genomes]
rs57655063	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59594716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60379168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274154	0.91[AFR][1000 genomes]
rs73274169	0.91[AFR][1000 genomes]
rs73288072	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290213	0.83[AFR][1000 genomes]
rs73290215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290217	0.81[AFR][1000 genomes]
rs73290223	0.83[AFR][1000 genomes]
rs73290224	0.83[AFR][1000 genomes]
rs73290225	0.83[AFR][1000 genomes]
rs73290228	0.83[AFR][1000 genomes]
rs73290230	0.83[AFR][1000 genomes]
rs73290233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290283	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44612000-44655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44651200-44655400	Weak transcription	Gastric	stomach
3	chr12:44653800-44654000	ZNF genes & repeats	Aorta	Aorta
4	chr12:44653800-44654200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:44653800-44654200	ZNF genes & repeats	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links