Variant report

Variant	rs73290230
Chromosome Location	chr12:44548187-44548188
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10161163	1.00[ASN][1000 genomes]
rs10161301	1.00[ASN][1000 genomes]
rs10506233	1.00[ASN][1000 genomes]
rs10506234	0.86[EUR][1000 genomes]
rs10506238	0.86[EUR][1000 genomes]
rs11182363	1.00[ASN][1000 genomes]
rs11182371	1.00[ASN][1000 genomes]
rs11182376	1.00[ASN][1000 genomes]
rs11182389	1.00[ASN][1000 genomes]
rs11182401	1.00[ASN][1000 genomes]
rs11832859	0.86[EUR][1000 genomes]
rs12099550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296329	0.83[EUR][1000 genomes]
rs12296939	1.00[ASN][1000 genomes]
rs12301421	1.00[ASN][1000 genomes]
rs12302401	1.00[ASN][1000 genomes]
rs12302578	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303163	1.00[ASN][1000 genomes]
rs12303870	1.00[ASN][1000 genomes]
rs12304783	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306873	0.83[EUR][1000 genomes]
rs12308508	0.87[ASN][1000 genomes]
rs12308564	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12308750	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309408	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310801	1.00[ASN][1000 genomes]
rs12311153	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319385	1.00[ASN][1000 genomes]
rs12319439	1.00[ASN][1000 genomes]
rs12319776	1.00[ASN][1000 genomes]
rs12320155	1.00[ASN][1000 genomes]
rs12321149	1.00[ASN][1000 genomes]
rs12321287	1.00[ASN][1000 genomes]
rs1388775	1.00[ASN][1000 genomes]
rs17094016	1.00[ASN][1000 genomes]
rs17094097	0.86[EUR][1000 genomes]
rs17094102	0.86[EUR][1000 genomes]
rs17094110	0.86[EUR][1000 genomes]
rs17094119	0.86[EUR][1000 genomes]
rs28495612	0.86[EUR][1000 genomes]
rs28538835	0.87[ASN][1000 genomes]
rs28654762	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57462004	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57655063	0.89[AFR][1000 genomes]
rs58851540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59152420	0.87[ASN][1000 genomes]
rs59594716	0.83[AFR][1000 genomes]
rs60026566	0.86[EUR][1000 genomes]
rs60379168	0.89[AFR][1000 genomes]
rs61628384	0.83[AFR][1000 genomes]
rs66993609	1.00[ASN][1000 genomes]
rs7298069	0.86[EUR][1000 genomes]
rs7298835	0.86[EUR][1000 genomes]
rs73100825	0.87[ASN][1000 genomes]
rs73100834	0.87[ASN][1000 genomes]
rs73272261	0.83[AFR][1000 genomes]
rs73272262	0.86[AFR][1000 genomes]
rs73272268	0.89[AFR][1000 genomes]
rs73272290	0.89[AFR][1000 genomes]
rs73272298	0.89[AFR][1000 genomes]
rs73274103	0.89[AFR][1000 genomes]
rs73274106	0.83[AFR][1000 genomes]
rs73274124	0.83[AFR][1000 genomes]
rs73274148	0.83[AFR][1000 genomes]
rs73286295	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286296	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73286301	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73288025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288052	0.86[EUR][1000 genomes]
rs73288054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288072	0.83[AFR][1000 genomes]
rs73288073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288085	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73288099	0.83[AFR][1000 genomes]
rs73290203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290208	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290215	0.89[AFR][1000 genomes]
rs73290217	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73290228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73290233	0.89[AFR][1000 genomes]
rs73290247	0.89[AFR][1000 genomes]
rs73290252	0.89[AFR][1000 genomes]
rs73290263	0.89[AFR][1000 genomes]
rs73290283	0.89[AFR][1000 genomes]
rs73290288	0.89[AFR][1000 genomes]
rs7953173	0.86[EUR][1000 genomes]
rs7967819	0.86[EUR][1000 genomes]
rs963095	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44530800-44573200	Weak transcription	Pancreas	Pancrea
3	chr12:44534800-44573000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44539600-44553800	Weak transcription	Aorta	Aorta
5	chr12:44547000-44554200	Enhancers	Fetal Heart	heart
6	chr12:44547200-44554400	Weak transcription	Left Ventricle	heart
7	chr12:44547800-44548200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:44547800-44548200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:44547800-44548200	Enhancers	Colon Smooth Muscle	Colon
10	chr12:44547800-44548200	Active TSS	Psoas Muscle	Psoas
11	chr12:44547800-44548200	Active TSS	Right Atrium	heart
12	chr12:44547800-44548200	Active TSS	Right Ventricle	heart
13	chr12:44547800-44548200	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr12:44547800-44548200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr12:44547800-44548200	Active TSS	Stomach Smooth Muscle	stomach
16	chr12:44547800-44548200	Active TSS	NHLF	lung
17	chr12:44547800-44548400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:44547800-44548400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:44547800-44548400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:44548000-44548200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links