Variant report

Variant	rs66993609
Chromosome Location	chr12:44660082-44660083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12099550	1.00[ASN][1000 genomes]
rs12302578	1.00[ASN][1000 genomes]
rs12304783	1.00[ASN][1000 genomes]
rs12308508	0.87[ASN][1000 genomes]
rs12308564	1.00[ASN][1000 genomes]
rs12308750	1.00[ASN][1000 genomes]
rs12309408	1.00[ASN][1000 genomes]
rs12311153	1.00[ASN][1000 genomes]
rs12319385	1.00[ASN][1000 genomes]
rs12319439	1.00[ASN][1000 genomes]
rs12319776	1.00[ASN][1000 genomes]
rs12321287	1.00[ASN][1000 genomes]
rs1388775	1.00[ASN][1000 genomes]
rs17094343	0.87[EUR][1000 genomes]
rs17094356	0.87[EUR][1000 genomes]
rs28538835	0.87[ASN][1000 genomes]
rs28654762	1.00[ASN][1000 genomes]
rs55840982	0.87[EUR][1000 genomes]
rs57462004	1.00[ASN][1000 genomes]
rs57851938	0.87[EUR][1000 genomes]
rs58851540	1.00[ASN][1000 genomes]
rs59152420	0.87[ASN][1000 genomes]
rs61399923	0.98[EUR][1000 genomes]
rs7305296	0.87[EUR][1000 genomes]
rs73086766	0.83[EUR][1000 genomes]
rs73100825	0.87[ASN][1000 genomes]
rs73100834	0.87[ASN][1000 genomes]
rs73100835	0.87[EUR][1000 genomes]
rs73100838	0.87[EUR][1000 genomes]
rs73100851	0.83[EUR][1000 genomes]
rs73102952	0.87[EUR][1000 genomes]
rs73102953	0.83[EUR][1000 genomes]
rs73102954	0.87[EUR][1000 genomes]
rs73102964	0.83[EUR][1000 genomes]
rs7311937	0.87[EUR][1000 genomes]
rs7313649	0.87[EUR][1000 genomes]
rs73288025	1.00[ASN][1000 genomes]
rs73288036	1.00[ASN][1000 genomes]
rs73288054	1.00[ASN][1000 genomes]
rs73288073	1.00[ASN][1000 genomes]
rs73288075	1.00[ASN][1000 genomes]
rs73288080	1.00[ASN][1000 genomes]
rs73288085	1.00[ASN][1000 genomes]
rs73288089	1.00[ASN][1000 genomes]
rs73288095	1.00[ASN][1000 genomes]
rs73290203	1.00[ASN][1000 genomes]
rs73290206	1.00[ASN][1000 genomes]
rs73290208	1.00[ASN][1000 genomes]
rs73290213	1.00[ASN][1000 genomes]
rs73290217	1.00[ASN][1000 genomes]
rs73290223	1.00[ASN][1000 genomes]
rs73290224	1.00[ASN][1000 genomes]
rs73290225	1.00[ASN][1000 genomes]
rs73290228	1.00[ASN][1000 genomes]
rs73290230	1.00[ASN][1000 genomes]
rs963095	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44654200-44679400	Weak transcription	Pancreas	Pancrea
2	chr12:44658400-44671800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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