Variant report

Variant	rs73100851
Chromosome Location	chr12:44608086-44608087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17094343	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17094356	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55840982	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56877775	0.82[EUR][1000 genomes]
rs57851938	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58602576	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59118688	0.83[EUR][1000 genomes]
rs61399923	0.81[EUR][1000 genomes]
rs66993609	0.83[EUR][1000 genomes]
rs7305296	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73086766	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73093451	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73093470	0.82[EUR][1000 genomes]
rs73093490	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73093494	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73093496	0.82[EUR][1000 genomes]
rs73096886	0.82[EUR][1000 genomes]
rs73099009	0.82[AFR][1000 genomes]
rs73099011	0.82[AFR][1000 genomes]
rs73099012	0.82[EUR][1000 genomes]
rs73100835	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73100838	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73102952	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73102953	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73102954	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73102964	0.89[EUR][1000 genomes]
rs7311937	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7313649	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7968824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44600200-44617000	Weak transcription	Ovary	ovary
2	chr12:44600400-44609400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:44603800-44609000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:44604600-44611200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:44607600-44608800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:44607600-44610400	Weak transcription	Pancreas	Pancrea
7	chr12:44607800-44611000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:44607800-44611600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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