Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17094343	0.86[EUR][1000 genomes]
rs17094356	0.86[EUR][1000 genomes]
rs55840982	0.86[EUR][1000 genomes]
rs56877775	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57851938	0.86[EUR][1000 genomes]
rs58602576	1.00[EUR][1000 genomes]
rs59618205	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7305296	0.86[EUR][1000 genomes]
rs73086766	0.82[EUR][1000 genomes]
rs73093451	1.00[EUR][1000 genomes]
rs73093470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093490	1.00[EUR][1000 genomes]
rs73093494	1.00[EUR][1000 genomes]
rs73093496	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73096886	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73100835	0.86[EUR][1000 genomes]
rs73100838	0.86[EUR][1000 genomes]
rs73100851	0.82[EUR][1000 genomes]
rs73102952	0.86[EUR][1000 genomes]
rs73102953	0.82[EUR][1000 genomes]
rs73102954	0.86[EUR][1000 genomes]
rs73102964	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7311937	0.86[EUR][1000 genomes]
rs7313649	0.86[EUR][1000 genomes]
rs7968824	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44530800-44573200	Weak transcription	Pancreas	Pancrea
3	chr12:44534800-44573000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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