Variant report

Variant	rs11832859
Chromosome Location	chr12:44524791-44524792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10047523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1032886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10506238	1.00[EUR][1000 genomes]
rs10880622	0.95[ASN][1000 genomes]
rs10880623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10880628	0.93[ASN][1000 genomes]
rs11182417	0.92[ASN][1000 genomes]
rs11182423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11182430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11182431	0.93[ASN][1000 genomes]
rs11182432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11182442	0.93[ASN][1000 genomes]
rs11182443	1.00[JPT][hapmap]
rs11182449	1.00[JPT][hapmap]
rs11182453	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11182455	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1155808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11612946	0.90[JPT][hapmap]
rs11615473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1168078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11832219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11835507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12099550	0.86[EUR][1000 genomes]
rs12099982	0.97[ASN][1000 genomes]
rs12297689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12297754	0.93[ASN][1000 genomes]
rs12297933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12299030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12299937	0.93[ASN][1000 genomes]
rs12300793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12307454	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12307560	1.00[JPT][hapmap]
rs12308449	0.90[ASN][1000 genomes]
rs12308569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12309639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12319009	0.95[ASN][1000 genomes]
rs1643429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1643431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1701088	0.98[ASN][1000 genomes]
rs1701094	0.92[CHB][hapmap]
rs17094092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17094097	1.00[EUR][1000 genomes]
rs17094102	1.00[EUR][1000 genomes]
rs17094110	1.00[EUR][1000 genomes]
rs17094119	1.00[EUR][1000 genomes]
rs17094183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17094231	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17094235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094344	1.00[JPT][hapmap]
rs17121310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2032782	1.00[JPT][hapmap]
rs2062952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2062954	0.98[ASN][1000 genomes]
rs2112147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2174508	0.98[ASN][1000 genomes]
rs2638853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2638855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2657575	0.86[CHB][hapmap]
rs2657576	0.93[ASN][1000 genomes]
rs2657577	0.89[ASN][1000 genomes]
rs28495612	1.00[EUR][1000 genomes]
rs57907832	0.93[ASN][1000 genomes]
rs58851540	0.86[EUR][1000 genomes]
rs59118688	0.80[ASN][1000 genomes]
rs59375742	0.93[ASN][1000 genomes]
rs60026566	1.00[EUR][1000 genomes]
rs61690882	0.93[ASN][1000 genomes]
rs66970043	0.95[ASN][1000 genomes]
rs67184817	0.93[ASN][1000 genomes]
rs67713366	0.93[ASN][1000 genomes]
rs7137469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7295281	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7295832	0.93[ASN][1000 genomes]
rs7297563	0.93[ASN][1000 genomes]
rs7298069	1.00[EUR][1000 genomes]
rs7298835	1.00[EUR][1000 genomes]
rs7305976	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7306647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7312930	0.93[ASN][1000 genomes]
rs7313269	0.93[ASN][1000 genomes]
rs7315208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7316737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs73286295	0.86[EUR][1000 genomes]
rs73286296	0.86[EUR][1000 genomes]
rs73286301	0.86[EUR][1000 genomes]
rs73288025	0.86[EUR][1000 genomes]
rs73288036	0.86[EUR][1000 genomes]
rs73288052	1.00[EUR][1000 genomes]
rs73288054	0.86[EUR][1000 genomes]
rs73288073	0.86[EUR][1000 genomes]
rs73288075	0.86[EUR][1000 genomes]
rs73288080	0.86[EUR][1000 genomes]
rs73288085	0.86[EUR][1000 genomes]
rs73288089	0.86[EUR][1000 genomes]
rs73288095	0.86[EUR][1000 genomes]
rs73290203	0.86[EUR][1000 genomes]
rs73290206	0.86[EUR][1000 genomes]
rs73290208	0.86[EUR][1000 genomes]
rs73290213	0.86[EUR][1000 genomes]
rs73290217	0.86[EUR][1000 genomes]
rs73290223	0.86[EUR][1000 genomes]
rs73290224	0.86[EUR][1000 genomes]
rs73290228	0.86[EUR][1000 genomes]
rs73290230	0.86[EUR][1000 genomes]
rs7961974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7969885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7976652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7977482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7977539	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44510800-44531400	Weak transcription	Psoas Muscle	Psoas
2	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44519400-44526000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:44520000-44525400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:44522000-44534000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44522200-44528000	Weak transcription	Left Ventricle	heart
7	chr12:44522400-44526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:44522400-44545200	Weak transcription	HSMMtube	muscle
9	chr12:44523200-44527000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:44524600-44524800	Enhancers	Cortex derived primary cultured neurospheres	brain

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