Variant report

Variant	rs11182449
Chromosome Location	chr12:44661675-44661676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10047523	1.00[JPT][hapmap]
rs1032886	1.00[JPT][hapmap]
rs10506242	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10880623	1.00[JPT][hapmap]
rs11182423	1.00[JPT][hapmap]
rs11182430	1.00[JPT][hapmap]
rs11182432	1.00[JPT][hapmap]
rs11182443	1.00[JPT][hapmap]
rs11182453	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11182455	0.89[JPT][hapmap]
rs1155808	1.00[JPT][hapmap]
rs11609304	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11609727	0.91[EUR][1000 genomes]
rs11610994	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11611103	0.82[EUR][1000 genomes]
rs11612076	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11612946	1.00[JPT][hapmap]
rs11613956	0.82[EUR][1000 genomes]
rs11615473	1.00[JPT][hapmap]
rs11615732	0.91[EUR][1000 genomes]
rs1168078	1.00[JPT][hapmap]
rs11832219	1.00[JPT][hapmap]
rs11832859	1.00[JPT][hapmap]
rs11835507	1.00[JPT][hapmap]
rs12297689	1.00[JPT][hapmap]
rs12297933	1.00[JPT][hapmap]
rs12299030	1.00[JPT][hapmap]
rs12300793	1.00[JPT][hapmap]
rs12307454	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12307560	1.00[JPT][hapmap]
rs12308569	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12309639	1.00[JPT][hapmap]
rs1643429	1.00[JPT][hapmap]
rs1643431	1.00[JPT][hapmap]
rs17094092	1.00[JPT][hapmap]
rs17094183	1.00[JPT][hapmap]
rs17094227	1.00[JPT][hapmap]
rs17094231	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17094235	1.00[JPT][hapmap]
rs17094344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17094352	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17121310	1.00[JPT][hapmap]
rs2032782	1.00[JPT][hapmap]
rs2062952	1.00[JPT][hapmap]
rs2112147	1.00[JPT][hapmap]
rs2407818	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2638853	1.00[JPT][hapmap]
rs2638855	1.00[JPT][hapmap]
rs28799901	0.91[EUR][1000 genomes]
rs34378333	0.91[EUR][1000 genomes]
rs34621645	0.82[EUR][1000 genomes]
rs35156535	0.91[EUR][1000 genomes]
rs35503487	0.91[EUR][1000 genomes]
rs56134810	0.87[ASN][1000 genomes]
rs59118688	0.81[ASN][1000 genomes]
rs7137469	1.00[JPT][hapmap]
rs7295281	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7305976	0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7306647	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7315208	1.00[JPT][hapmap]
rs7316737	1.00[JPT][hapmap]
rs73274137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73274154	0.91[EUR][1000 genomes]
rs73274169	0.89[EUR][1000 genomes]
rs7961974	1.00[JPT][hapmap]
rs7969885	1.00[JPT][hapmap]
rs7976652	1.00[JPT][hapmap]
rs7977482	1.00[JPT][hapmap]
rs7977539	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44654200-44679400	Weak transcription	Pancreas	Pancrea
2	chr12:44658400-44671800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links