Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506242	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182449	0.91[EUR][1000 genomes]
rs11609304	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11609727	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610994	0.88[EUR][1000 genomes]
rs11611103	0.90[EUR][1000 genomes]
rs11612076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11613956	0.90[EUR][1000 genomes]
rs11615732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094352	0.89[EUR][1000 genomes]
rs2407818	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34378333	1.00[EUR][1000 genomes]
rs34621645	0.90[EUR][1000 genomes]
rs35156535	1.00[EUR][1000 genomes]
rs35503487	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59594716	0.84[AFR][1000 genomes]
rs61628384	0.84[AFR][1000 genomes]
rs73274106	0.84[AFR][1000 genomes]
rs73274124	0.84[AFR][1000 genomes]
rs73274137	0.91[EUR][1000 genomes]
rs73274148	0.84[AFR][1000 genomes]
rs73274154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274169	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44654200-44679400	Weak transcription	Pancreas	Pancrea
2	chr12:44658400-44671800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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