Variant report

Variant	rs34621645
Chromosome Location	chr12:44485564-44485565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10506235	1.00[ASN][1000 genomes]
rs10506236	1.00[ASN][1000 genomes]
rs10506237	1.00[ASN][1000 genomes]
rs10506239	1.00[ASN][1000 genomes]
rs10506240	1.00[ASN][1000 genomes]
rs10506241	1.00[ASN][1000 genomes]
rs10506242	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115423	1.00[ASN][1000 genomes]
rs11182449	0.82[EUR][1000 genomes]
rs11609304	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609727	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610433	1.00[ASN][1000 genomes]
rs11610994	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611103	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612076	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612257	1.00[ASN][1000 genomes]
rs11613064	1.00[ASN][1000 genomes]
rs11613956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615732	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094062	1.00[ASN][1000 genomes]
rs17094121	1.00[ASN][1000 genomes]
rs17094169	1.00[ASN][1000 genomes]
rs17094226	1.00[ASN][1000 genomes]
rs17094263	1.00[ASN][1000 genomes]
rs17094298	1.00[ASN][1000 genomes]
rs17094300	1.00[ASN][1000 genomes]
rs17094322	1.00[ASN][1000 genomes]
rs17094323	1.00[ASN][1000 genomes]
rs17094325	1.00[ASN][1000 genomes]
rs17094352	0.80[EUR][1000 genomes]
rs17554010	0.88[AMR][1000 genomes]
rs2407818	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28799901	0.90[EUR][1000 genomes]
rs34378333	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35156535	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35503487	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633842	1.00[ASN][1000 genomes]
rs55649839	1.00[ASN][1000 genomes]
rs56192803	1.00[ASN][1000 genomes]
rs56218625	1.00[ASN][1000 genomes]
rs56339470	1.00[ASN][1000 genomes]
rs57010132	1.00[ASN][1000 genomes]
rs57094207	1.00[ASN][1000 genomes]
rs58206004	1.00[ASN][1000 genomes]
rs59477802	1.00[ASN][1000 genomes]
rs60995491	1.00[ASN][1000 genomes]
rs61629163	1.00[ASN][1000 genomes]
rs7139362	1.00[ASN][1000 genomes]
rs73093458	1.00[ASN][1000 genomes]
rs73093474	1.00[ASN][1000 genomes]
rs73094803	1.00[ASN][1000 genomes]
rs73099009	1.00[ASN][1000 genomes]
rs73099011	1.00[ASN][1000 genomes]
rs73099027	1.00[ASN][1000 genomes]
rs73100803	1.00[ASN][1000 genomes]
rs73100829	1.00[ASN][1000 genomes]
rs73102919	1.00[ASN][1000 genomes]
rs73102924	1.00[ASN][1000 genomes]
rs7310881	1.00[ASN][1000 genomes]
rs73274137	0.82[EUR][1000 genomes]
rs73274154	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73274169	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522314	chr12:44471709-44487061	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3502007	chr12:44480230-44487575	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3502018	chr12:44480244-44487571	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44469400-44495600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:44482800-44501000	Weak transcription	Left Ventricle	heart
3	chr12:44483000-44485800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:44484600-44488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:44485400-44486200	Enhancers	Fetal Stomach	stomach

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