Variant report

Variant	rs17094344
Chromosome Location	chr12:44641928-44641929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10047523	1.00[JPT][hapmap]
rs1032886	1.00[JPT][hapmap]
rs10880623	1.00[JPT][hapmap]
rs11182423	1.00[JPT][hapmap]
rs11182430	1.00[JPT][hapmap]
rs11182432	1.00[JPT][hapmap]
rs11182443	1.00[JPT][hapmap]
rs11182449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11182453	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182455	0.90[JPT][hapmap]
rs1155808	1.00[JPT][hapmap]
rs11612946	0.90[JPT][hapmap]
rs11615473	1.00[JPT][hapmap]
rs1168078	1.00[JPT][hapmap]
rs11832219	1.00[JPT][hapmap]
rs11832859	1.00[JPT][hapmap]
rs11835507	1.00[JPT][hapmap]
rs12297689	1.00[JPT][hapmap]
rs12297933	1.00[JPT][hapmap]
rs12299030	1.00[JPT][hapmap]
rs12300793	1.00[JPT][hapmap]
rs12307454	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12307560	1.00[JPT][hapmap]
rs12308569	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12309639	1.00[JPT][hapmap]
rs12314054	1.00[EUR][1000 genomes]
rs1643429	1.00[JPT][hapmap]
rs1643431	1.00[JPT][hapmap]
rs17094092	1.00[JPT][hapmap]
rs17094160	1.00[EUR][1000 genomes]
rs17094183	1.00[JPT][hapmap]
rs17094227	1.00[JPT][hapmap]
rs17094231	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17094235	1.00[JPT][hapmap]
rs17121310	1.00[JPT][hapmap]
rs2032782	1.00[JPT][hapmap]
rs2062952	1.00[JPT][hapmap]
rs2112147	1.00[JPT][hapmap]
rs2407817	1.00[EUR][1000 genomes]
rs2638853	1.00[JPT][hapmap]
rs2638855	1.00[JPT][hapmap]
rs41531550	1.00[EUR][1000 genomes]
rs56134810	0.85[ASN][1000 genomes]
rs59118688	0.83[ASN][1000 genomes]
rs7137469	1.00[JPT][hapmap]
rs7295281	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7305976	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7306647	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7315208	1.00[JPT][hapmap]
rs7316737	1.00[JPT][hapmap]
rs73274137	0.98[ASN][1000 genomes]
rs7961974	1.00[JPT][hapmap]
rs7969885	1.00[JPT][hapmap]
rs7976652	1.00[JPT][hapmap]
rs7977482	1.00[JPT][hapmap]
rs7977539	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44612000-44655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44635800-44643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:44640200-44642200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:44641000-44643800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:44641600-44642800	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr12:44641600-44643800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:44641800-44642200	Weak transcription	Gastric	stomach
8	chr12:44641800-44642400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:44641800-44643000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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