Variant report

Variant	rs17094227
Chromosome Location	chr12:44601036-44601037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10047523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1032886	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10506238	0.86[EUR][1000 genomes]
rs10880622	0.97[ASN][1000 genomes]
rs10880623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10880628	0.98[ASN][1000 genomes]
rs11182417	0.87[ASN][1000 genomes]
rs11182423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11182430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11182431	0.98[ASN][1000 genomes]
rs11182432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11182442	0.98[ASN][1000 genomes]
rs11182443	0.94[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes]
rs11182449	1.00[JPT][hapmap]
rs11182453	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11182455	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs1155808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11612946	1.00[JPT][hapmap]
rs11615473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1168078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11832219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11832859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11835507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12099982	0.92[ASN][1000 genomes]
rs12296329	0.83[EUR][1000 genomes]
rs12297689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12297754	0.98[ASN][1000 genomes]
rs12297933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12299030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12299937	0.98[ASN][1000 genomes]
rs12300793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12302578	0.83[EUR][1000 genomes]
rs12304783	0.83[EUR][1000 genomes]
rs12306873	0.83[EUR][1000 genomes]
rs12307454	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12307560	1.00[JPT][hapmap]
rs12308449	0.95[ASN][1000 genomes]
rs12308564	0.83[EUR][1000 genomes]
rs12308569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12308750	0.83[EUR][1000 genomes]
rs12309408	0.83[EUR][1000 genomes]
rs12309639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12311153	0.83[EUR][1000 genomes]
rs12319009	0.97[ASN][1000 genomes]
rs1643429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1643431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1701088	0.93[ASN][1000 genomes]
rs1701094	0.92[CHB][hapmap];0.86[CHD][hapmap]
rs17094092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17094097	0.86[EUR][1000 genomes]
rs17094102	0.86[EUR][1000 genomes]
rs17094110	0.86[EUR][1000 genomes]
rs17094119	0.86[EUR][1000 genomes]
rs17094183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17094231	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17094235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17094344	1.00[JPT][hapmap]
rs17121310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2032782	1.00[JPT][hapmap]
rs2062952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2062954	0.93[ASN][1000 genomes]
rs2112147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2174508	0.93[ASN][1000 genomes]
rs2638853	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2638855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2657575	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs2657576	0.98[ASN][1000 genomes]
rs2657577	0.94[ASN][1000 genomes]
rs28495612	0.86[EUR][1000 genomes]
rs28654762	0.83[EUR][1000 genomes]
rs57907832	0.98[ASN][1000 genomes]
rs59118688	0.85[ASN][1000 genomes]
rs59375742	0.98[ASN][1000 genomes]
rs60026566	0.86[EUR][1000 genomes]
rs61690882	0.98[ASN][1000 genomes]
rs66970043	0.97[ASN][1000 genomes]
rs67184817	0.98[ASN][1000 genomes]
rs67713366	0.88[ASN][1000 genomes]
rs7137469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7295281	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7295832	0.98[ASN][1000 genomes]
rs7297563	0.98[ASN][1000 genomes]
rs7298069	0.86[EUR][1000 genomes]
rs7298835	0.86[EUR][1000 genomes]
rs7305976	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7306647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7312930	0.98[ASN][1000 genomes]
rs7313269	0.98[ASN][1000 genomes]
rs7315208	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7316737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs73272267	0.83[AFR][1000 genomes]
rs73288052	0.86[EUR][1000 genomes]
rs7961974	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7969885	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7976652	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7977482	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7977539	0.89[ASW][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44600000-44606000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:44600200-44617000	Weak transcription	Ovary	ovary
4	chr12:44600400-44607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:44600400-44609400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links