Variant report

Variant	rs6584147
Chromosome Location	chr10:99463684-99463685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10786366	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12265254	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12415272	0.85[CEU][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4919131	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6584148	0.85[CEU][hapmap];0.81[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7899948	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7913630	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6584147	PI4K2A	cis	parietal	SCAN
rs6584147	FRAT2	cis	cerebellum	SCAN
rs6584147	SFRP5	cis	cerebellum	SCAN
rs6584147	DHDPSL	cis	cerebellum	SCAN
rs6584147	C10orf62	cis	cerebellum	SCAN
rs6584147	PI4K2A	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99461600-99466600	Weak transcription	Liver	Liver
2	chr10:99461600-99467000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:99461600-99467200	Weak transcription	Fetal Heart	heart
4	chr10:99461800-99468000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:99461800-99468800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:99462000-99464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:99462000-99464800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:99462000-99464800	Weak transcription	HepG2	liver
9	chr10:99462000-99466400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:99462000-99468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:99462000-99468800	Weak transcription	NHDF-Ad	bronchial
12	chr10:99462000-99472800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:99462200-99464800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:99462200-99465000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:99462200-99468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:99462200-99469000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:99463600-99463800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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