Variant report

Variant	rs7913630
Chromosome Location	chr10:99465311-99465312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10786366	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6584147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7899948	0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99461600-99466600	Weak transcription	Liver	Liver
2	chr10:99461600-99467000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:99461600-99467200	Weak transcription	Fetal Heart	heart
4	chr10:99461800-99468000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:99461800-99468800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:99462000-99466400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:99462000-99468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:99462000-99468800	Weak transcription	NHDF-Ad	bronchial
9	chr10:99462000-99472800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:99462200-99468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:99462200-99469000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:99463800-99468800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:99464800-99466800	Enhancers	HepG2	liver
14	chr10:99465200-99465400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:99465200-99469000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:99465200-99469000	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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