Variant report

Variant	rs6585285
Chromosome Location	chr10:116280423-116280424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116265831..116269347-chr10:116277176..116281462,5	MCF-7	breast:
2	chr10:116278426..116280614-chr10:116307779..116309326,2	MCF-7	breast:
3	chr10:116263421..116264995-chr10:116278964..116280973,2	MCF-7	breast:
4	chr10:116252911..116255379-chr10:116278820..116280848,2	MCF-7	breast:
5	chr10:116279356..116283569-chr10:116284064..116286788,6	MCF-7	breast:
6	chr10:116265784..116270126-chr10:116277666..116281304,6	MCF-7	breast:
7	chr10:116278296..116281512-chr10:116284242..116288228,7	MCF-7	breast:
8	chr10:116257493..116259296-chr10:116279810..116281846,2	MCF-7	breast:
9	chr10:116274510..116277098-chr10:116279829..116282526,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11196775	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2475239	0.81[CEU][hapmap]
rs2497708	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
2	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:116270600-116283000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116275400-116281600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:116275400-116283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:116275800-116283600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:116276600-116284600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:116276800-116283400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:116277000-116281600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:116277000-116283800	Weak transcription	Fetal Stomach	stomach
11	chr10:116277200-116281400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:116277200-116281600	Weak transcription	Gastric	stomach
13	chr10:116277200-116281800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:116277200-116284600	Weak transcription	Brain Angular Gyrus	brain
15	chr10:116277800-116281600	Weak transcription	Brain Substantia Nigra	brain
16	chr10:116277800-116284600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:116278000-116280800	Enhancers	HMEC	breast
18	chr10:116278200-116280800	Enhancers	Placenta	Placenta
19	chr10:116278200-116284600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:116278600-116281200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:116278600-116281400	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
22	chr10:116278600-116281800	Genic enhancers	Primary T cells fromperipheralblood	blood
23	chr10:116278600-116282800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:116278600-116282800	Enhancers	Fetal Lung	lung
25	chr10:116278600-116283200	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr10:116278800-116280600	Enhancers	Liver	Liver
27	chr10:116278800-116281400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:116278800-116281800	Enhancers	Fetal Intestine Large	intestine
29	chr10:116278800-116284600	Enhancers	Primary hematopoietic stem cells	blood
30	chr10:116278800-116284600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr10:116278800-116285000	Genic enhancers	Left Ventricle	heart
32	chr10:116279000-116280800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:116279200-116281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:116279200-116281600	Weak transcription	Primary B cells from cord blood	blood
35	chr10:116279400-116280600	Enhancers	GM12878-XiMat	blood
36	chr10:116279400-116281600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:116279400-116283800	Enhancers	Right Ventricle	heart
38	chr10:116279400-116285800	Weak transcription	Psoas Muscle	Psoas
39	chr10:116279600-116281200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:116279600-116281400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:116279600-116281600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:116279800-116281000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr10:116279800-116281400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:116279800-116281400	Weak transcription	Colonic Mucosa	Colon
45	chr10:116279800-116283000	Weak transcription	Esophagus	oesophagus
46	chr10:116279800-116284600	Weak transcription	Aorta	Aorta
47	chr10:116279800-116284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:116279800-116286000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:116280000-116280800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr10:116280000-116280800	Genic enhancers	Hela-S3	cervix

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