Variant report

Variant	rs11196775
Chromosome Location	chr10:116279023-116279024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116277123..116279175-chr10:116283910..116286373,2	MCF-7	breast:
2	chr10:116265831..116269347-chr10:116277176..116281462,5	MCF-7	breast:
3	chr10:116278426..116280614-chr10:116307779..116309326,2	MCF-7	breast:
4	chr10:116263421..116264995-chr10:116278964..116280973,2	MCF-7	breast:
5	chr10:116252911..116255379-chr10:116278820..116280848,2	MCF-7	breast:
6	chr10:116265784..116270126-chr10:116277666..116281304,6	MCF-7	breast:
7	chr10:116278296..116281512-chr10:116284242..116288228,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10159807	0.85[JPT][hapmap]
rs10787533	0.90[MEX][hapmap]
rs10787538	0.90[MEX][hapmap]
rs10885581	0.90[MEX][hapmap]
rs10885586	0.90[MEX][hapmap]
rs11196793	0.85[MEX][hapmap]
rs11196796	0.84[MEX][hapmap]
rs12357781	0.90[MEX][hapmap]
rs2475239	0.85[CEU][hapmap]
rs2497708	0.82[CEU][hapmap]
rs6585285	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7923449	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11196775	ESRRA	trans	cerebellum	SCAN
rs11196775	PNLIPRP2	cis	cerebellum	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
2	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
3	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
5	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:116270600-116283000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:116272000-116280000	Weak transcription	HUVEC	blood vessel
8	chr10:116273400-116280400	Enhancers	Fetal Heart	heart
9	chr10:116274400-116279400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:116274400-116279600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:116275000-116279600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:116275200-116279400	Weak transcription	Small Intestine	intestine
13	chr10:116275400-116281600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:116275400-116283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:116275800-116283600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:116276600-116280000	Enhancers	Right Atrium	heart
17	chr10:116276600-116280200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:116276600-116284600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:116276800-116280200	Enhancers	Ovary	ovary
20	chr10:116276800-116283400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:116277000-116279600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:116277000-116281600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:116277000-116283800	Weak transcription	Fetal Stomach	stomach
24	chr10:116277200-116279200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:116277200-116279400	Weak transcription	Lung	lung
26	chr10:116277200-116279400	Enhancers	Stomach Mucosa	stomach
27	chr10:116277200-116279600	Weak transcription	Adipose Nuclei	Adipose
28	chr10:116277200-116281400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:116277200-116281600	Weak transcription	Gastric	stomach
30	chr10:116277200-116281800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:116277200-116284600	Weak transcription	Brain Angular Gyrus	brain
32	chr10:116277400-116279400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:116277400-116279800	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:116277600-116279400	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr10:116277600-116279800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:116277800-116280200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr10:116277800-116281600	Weak transcription	Brain Substantia Nigra	brain
38	chr10:116277800-116284600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:116278000-116280200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:116278000-116280800	Enhancers	HMEC	breast
41	chr10:116278200-116279400	Weak transcription	Fetal Kidney	kidney
42	chr10:116278200-116279800	Enhancers	Esophagus	oesophagus
43	chr10:116278200-116279800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:116278200-116280200	Enhancers	NHLF	lung
45	chr10:116278200-116280800	Enhancers	Placenta	Placenta
46	chr10:116278200-116284600	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:116278400-116279600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr10:116278400-116280200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:116278600-116279200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr10:116278600-116280000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood

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