Variant report

Variant	rs10787533
Chromosome Location	chr10:116288063-116288064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10159807	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10159811	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10159857	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10749167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10749168	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787534	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787538	0.91[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885576	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885578	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885579	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885581	0.91[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885582	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10885583	0.89[GIH][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10885585	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10885586	0.91[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap]
rs11196775	0.90[MEX][hapmap]
rs11196782	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196783	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196784	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196786	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11196790	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11196793	0.93[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs11196796	0.91[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs12357781	0.91[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs12772307	0.82[AMR][1000 genomes]
rs1333686	0.82[AMR][1000 genomes]
rs2483535	0.84[YRI][hapmap]
rs2483539	0.84[YRI][hapmap]
rs2483541	0.84[YRI][hapmap]
rs2483543	0.83[YRI][hapmap]
rs2483544	0.84[YRI][hapmap]
rs2483548	0.84[YRI][hapmap]
rs2483553	0.84[YRI][hapmap]
rs2497725	0.84[YRI][hapmap]
rs2497730	0.84[YRI][hapmap]
rs2497731	0.84[YRI][hapmap]
rs2497735	0.82[YRI][hapmap]
rs4751583	0.83[AMR][1000 genomes]
rs7893570	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923449	0.83[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10787533	ABLIM1	cis	multi-tissue	Pritchard

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116286800-116291600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116286800-116291800	Weak transcription	Pancreas	Pancrea
3	chr10:116286800-116294200	Weak transcription	Placenta	Placenta
4	chr10:116286800-116298000	Weak transcription	Esophagus	oesophagus
5	chr10:116287000-116288400	Enhancers	Fetal Stomach	stomach
6	chr10:116287000-116291600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:116287000-116291600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:116287000-116291800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:116287000-116292400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:116287000-116296600	Weak transcription	HSMM	muscle
11	chr10:116287000-116298200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:116287000-116298200	Weak transcription	Lung	lung
13	chr10:116287000-116301200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:116287200-116288400	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:116287200-116288400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:116287200-116288400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:116287200-116288600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:116287200-116288800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:116287200-116292000	Weak transcription	HSMMtube	muscle
20	chr10:116287200-116299400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:116287200-116299400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:116287200-116300600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:116287200-116301600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:116287200-116307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:116287400-116288200	Enhancers	Primary B cells from cord blood	blood
26	chr10:116287400-116288200	Weak transcription	Left Ventricle	heart
27	chr10:116287400-116288200	Weak transcription	Right Ventricle	heart
28	chr10:116287400-116288400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:116287400-116288600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:116287400-116288600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:116287400-116288800	Enhancers	Fetal Thymus	thymus
32	chr10:116287400-116289400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr10:116287400-116289400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr10:116287400-116289400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:116287400-116289400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:116287400-116289600	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:116287400-116290600	Weak transcription	Spleen	Spleen
38	chr10:116287400-116291600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:116287400-116291800	Weak transcription	Adipose Nuclei	Adipose
40	chr10:116287400-116293400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr10:116287400-116294800	Weak transcription	Fetal Kidney	kidney
42	chr10:116287400-116296200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:116287400-116297200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr10:116287400-116297400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:116287400-116297400	Weak transcription	Fetal Heart	heart
46	chr10:116287400-116297600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:116287400-116297800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:116287400-116298000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:116287400-116298000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:116287400-116298200	Weak transcription	HMEC	breast

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