Variant report

Variant	rs10749168
Chromosome Location	chr10:116301983-116301984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116299755..116302305-chr10:116302434..116304411,2	MCF-7	breast:
2	chr10:116285513..116287019-chr10:116299308..116302056,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10159807	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10159811	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159857	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787533	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787534	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787538	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10885574	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885578	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885579	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885581	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10885582	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885583	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885585	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885586	0.84[EUR][1000 genomes]
rs11196782	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196783	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196784	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196786	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11196790	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11196794	0.80[EUR][1000 genomes]
rs11196796	0.84[EUR][1000 genomes]
rs11196797	0.85[EUR][1000 genomes]
rs12357781	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12772307	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1333686	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1333690	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4751583	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7893570	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923449	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116287200-116307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:116287400-116303200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:116287400-116303800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:116287400-116310600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:116287400-116310600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:116292400-116303800	Weak transcription	Pancreas	Pancrea
7	chr10:116296600-116303600	Enhancers	Fetal Thymus	thymus
8	chr10:116296800-116303400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:116297600-116305200	Enhancers	Dnd41	blood
10	chr10:116297600-116308600	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:116297800-116308600	Enhancers	Stomach Mucosa	stomach
12	chr10:116298000-116302800	Enhancers	Right Atrium	heart
13	chr10:116298000-116308800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:116298200-116302600	Weak transcription	HUVEC	blood vessel
15	chr10:116298200-116307800	Strong transcription	Fetal Intestine Small	intestine
16	chr10:116298400-116303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:116298400-116307200	Strong transcription	Liver	Liver
18	chr10:116298400-116307600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:116298400-116310200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:116298600-116303200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:116298600-116303400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:116298600-116303400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:116298600-116303400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:116298600-116304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:116298600-116311600	Weak transcription	Gastric	stomach
26	chr10:116298800-116302400	Weak transcription	Lung	lung
27	chr10:116298800-116302400	Weak transcription	Spleen	Spleen
28	chr10:116298800-116303400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:116298800-116310400	Weak transcription	Small Intestine	intestine
30	chr10:116298800-116310600	Weak transcription	Colonic Mucosa	Colon
31	chr10:116299600-116308200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:116299800-116302000	Weak transcription	Primary B cells from cord blood	blood
33	chr10:116299800-116308800	Genic enhancers	Left Ventricle	heart
34	chr10:116300000-116302000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr10:116300000-116302000	Enhancers	Fetal Muscle Trunk	muscle
36	chr10:116300000-116303400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:116300000-116304000	Genic enhancers	Right Ventricle	heart
38	chr10:116300000-116306400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:116300200-116302000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr10:116300200-116304000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:116300200-116307400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:116300400-116302000	Genic enhancers	Fetal Stomach	stomach
43	chr10:116300400-116307600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:116300600-116302000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:116300600-116302000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:116300600-116302000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:116300600-116302000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:116300600-116302000	Enhancers	NHEK	skin
49	chr10:116300600-116302000	Enhancers	NHLF	lung
50	chr10:116300600-116302600	Enhancers	Rectal Mucosa Donor 31	rectum

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