Variant report

Variant	rs11196783
Chromosome Location	chr10:116304133-116304134
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116302698..116304630-chr10:116307887..116309527,2	MCF-7	breast:
2	chr10:116299755..116302305-chr10:116302434..116304411,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10159807	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10159811	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159857	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749167	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749168	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787533	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787534	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787535	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787538	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10885574	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885576	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885581	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10885582	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885583	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885585	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885586	0.84[EUR][1000 genomes]
rs11196782	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196784	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196786	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11196790	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11196794	0.81[EUR][1000 genomes]
rs11196796	0.85[EUR][1000 genomes]
rs11196797	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12357781	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12772307	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1333686	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1333690	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4751583	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7893570	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923449	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116287200-116307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:116287400-116310600	Weak transcription	Brain Angular Gyrus	brain
3	chr10:116287400-116310600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:116297600-116305200	Enhancers	Dnd41	blood
5	chr10:116297600-116308600	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:116297800-116308600	Enhancers	Stomach Mucosa	stomach
7	chr10:116298000-116308800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:116298200-116307800	Strong transcription	Fetal Intestine Small	intestine
9	chr10:116298400-116307200	Strong transcription	Liver	Liver
10	chr10:116298400-116307600	Weak transcription	Brain Substantia Nigra	brain
11	chr10:116298400-116310200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:116298600-116304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:116298600-116311600	Weak transcription	Gastric	stomach
14	chr10:116298800-116310400	Weak transcription	Small Intestine	intestine
15	chr10:116298800-116310600	Weak transcription	Colonic Mucosa	Colon
16	chr10:116299600-116308200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:116299800-116308800	Genic enhancers	Left Ventricle	heart
18	chr10:116300000-116306400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:116300200-116307400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:116300400-116307600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:116300600-116310600	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:116300800-116304400	Strong transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:116300800-116305000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:116301800-116304200	Strong transcription	Fetal Heart	heart
25	chr10:116301800-116304800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:116301800-116307400	Weak transcription	Placenta	Placenta
27	chr10:116301800-116310600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:116301800-116310600	Weak transcription	Fetal Lung	lung
29	chr10:116301800-116310800	Weak transcription	HSMM	muscle
30	chr10:116302000-116304600	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:116302400-116305000	Strong transcription	HSMMtube	muscle
32	chr10:116302600-116305000	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:116302800-116304200	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr10:116302800-116307200	Weak transcription	Right Atrium	heart
35	chr10:116303000-116304800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr10:116303000-116305200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:116303200-116304200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:116303200-116304200	ZNF genes & repeats	Fetal Stomach	stomach
39	chr10:116303200-116304400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:116303200-116304600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr10:116303200-116305000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr10:116303200-116305200	Enhancers	NHEK	skin
43	chr10:116303200-116305400	Enhancers	HMEC	breast
44	chr10:116303200-116306800	Weak transcription	HUVEC	blood vessel
45	chr10:116303400-116304200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:116303400-116304200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr10:116303400-116304400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr10:116303400-116304600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr10:116303400-116304800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr10:116303400-116305200	Strong transcription	Lung	lung

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