Variant report

Variant	rs6586178
Chromosome Location	chr10:90993975-90993976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90993760..90996123-chr10:90998526..91001099,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6586177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90968200-90994800	Weak transcription	Gastric	stomach
2	chr10:90968400-91000800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:90968400-91002200	Weak transcription	Right Ventricle	heart
4	chr10:90973600-91001000	Weak transcription	Small Intestine	intestine
5	chr10:90975600-90994800	Weak transcription	Spleen	Spleen
6	chr10:90977400-90999000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:90977400-90999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:90977400-91010400	Weak transcription	Fetal Thymus	thymus
9	chr10:90977400-91010800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:90977600-90994600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:90977600-90998600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:90977600-90998600	Weak transcription	NH-A	brain
13	chr10:90977600-90998800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:90977600-90998800	Weak transcription	Dnd41	blood
15	chr10:90977600-90999000	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:90977600-90999400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:90977600-90999400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:90977600-91000600	Weak transcription	GM12878-XiMat	blood
19	chr10:90977600-91002000	Weak transcription	Hela-S3	cervix
20	chr10:90977600-91002000	Weak transcription	HSMMtube	muscle
21	chr10:90977600-91008800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:90977600-91009400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:90977600-91010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:90977600-91010800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:90978200-90998800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:90979400-91003600	Strong transcription	Primary T cells from cord blood	blood
27	chr10:90980000-90994000	Weak transcription	Esophagus	oesophagus
28	chr10:90980000-90995000	Weak transcription	Fetal Heart	heart
29	chr10:90980200-90999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:90982400-90998800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:90983400-90994600	Weak transcription	Left Ventricle	heart
32	chr10:90984000-90999600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:90984800-90998200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:90985000-90995000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:90985000-90999000	Weak transcription	Brain Germinal Matrix	brain
36	chr10:90985200-90995000	Weak transcription	Fetal Brain Male	brain
37	chr10:90985200-91001800	Weak transcription	Osteobl	bone
38	chr10:90985200-91010600	Weak transcription	Thymus	Thymus
39	chr10:90985400-90994600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:90985400-90999600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:90986600-90995400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:90986600-90995400	Strong transcription	Liver	Liver
43	chr10:90987200-90996200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:90987400-91010800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:90987600-91001200	Weak transcription	Fetal Lung	lung
46	chr10:90987600-91010800	Weak transcription	Pancreas	Pancrea
47	chr10:90987800-91010600	Weak transcription	HSMM	muscle
48	chr10:90988000-91010600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:90988200-90994000	Weak transcription	Ovary	ovary
50	chr10:90988200-90994000	Weak transcription	HepG2	liver

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