Variant report

Variant	rs7069914
Chromosome Location	chr10:90996144-90996145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6586177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90968400-91000800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:90968400-91002200	Weak transcription	Right Ventricle	heart
3	chr10:90973600-91001000	Weak transcription	Small Intestine	intestine
4	chr10:90977400-90999000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:90977400-90999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:90977400-91010400	Weak transcription	Fetal Thymus	thymus
7	chr10:90977400-91010800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:90977600-90998600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:90977600-90998600	Weak transcription	NH-A	brain
10	chr10:90977600-90998800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:90977600-90998800	Weak transcription	Dnd41	blood
12	chr10:90977600-90999000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:90977600-90999400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:90977600-90999400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:90977600-91000600	Weak transcription	GM12878-XiMat	blood
16	chr10:90977600-91002000	Weak transcription	Hela-S3	cervix
17	chr10:90977600-91002000	Weak transcription	HSMMtube	muscle
18	chr10:90977600-91008800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:90977600-91009400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:90977600-91010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:90977600-91010800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:90978200-90998800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:90979400-91003600	Strong transcription	Primary T cells from cord blood	blood
24	chr10:90980200-90999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:90982400-90998800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:90984000-90999600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:90984800-90998200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:90985000-90999000	Weak transcription	Brain Germinal Matrix	brain
29	chr10:90985200-91001800	Weak transcription	Osteobl	bone
30	chr10:90985200-91010600	Weak transcription	Thymus	Thymus
31	chr10:90985400-90999600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:90987200-90996200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:90987400-91010800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:90987600-91001200	Weak transcription	Fetal Lung	lung
35	chr10:90987600-91010800	Weak transcription	Pancreas	Pancrea
36	chr10:90987800-91010600	Weak transcription	HSMM	muscle
37	chr10:90988000-91010600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:90988200-90998800	Weak transcription	NHLF	lung
39	chr10:90988200-90999000	Weak transcription	Fetal Brain Female	brain
40	chr10:90988200-91001800	Weak transcription	A549	lung
41	chr10:90989200-91003200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:90990000-91001800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:90990400-90998800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:90990800-90996400	Enhancers	Brain Substantia Nigra	brain
45	chr10:90991600-90996600	Enhancers	Brain Hippocampus Middle	brain
46	chr10:90992000-90996400	Enhancers	Brain Anterior Caudate	brain
47	chr10:90992000-90998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:90992200-90999200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:90992600-90996200	Enhancers	Adipose Nuclei	Adipose
50	chr10:90993200-90996600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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