Variant report

Variant	rs6587838
Chromosome Location	chr1:59165501-59165502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59158510..59160600-chr1:59164102..59165657,2	MCF-7	breast:
2	chr1:59163941..59165511-chr1:59183952..59186205,2	K562	blood:
3	chr1:59152149..59156069-chr1:59161646..59166160,4	K562	blood:
4	chr1:59152225..59156137-chr1:59164048..59166851,4	MCF-7	breast:
5	chr1:59145973..59148023-chr1:59165325..59167431,2	K562	blood:
6	chr1:59165034..59165710-chr5:40687487..40687987,2	Hela-S3	cervix:
7	chr1:59162606..59168890-chr1:59243728..59252069,16	K562	blood:
8	chr1:59165232..59165758-chr7:108209768..108210379,2	Hela-S3	cervix:
9	chr1:59155488..59157004-chr1:59164254..59165910,2	MCF-7	breast:
10	chr1:59163564..59170812-chr1:59245390..59251956,13	K562	blood:
11	chr1:59162282..59165513-chr1:59247637..59250778,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction
ENSG00000234807	Chromatin interaction
ENSG00000135241	Chromatin interaction
ENSG00000177606	Chromatin interaction
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction

rs_ID	r²[population]
rs6686388	0.85[AFR][1000 genomes]
rs7540308	0.92[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59164000-59165800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:59164000-59165800	Active TSS	GM12878-XiMat	blood
3	chr1:59164000-59166200	Active TSS	Psoas Muscle	Psoas
4	chr1:59164200-59165600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
5	chr1:59164200-59165600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:59164200-59165800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr1:59164200-59165800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:59164200-59165800	Active TSS	NHDF-Ad	bronchial
9	chr1:59164400-59165800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr1:59164400-59165800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:59164400-59166000	Active TSS	NHLF	lung
12	chr1:59164400-59166200	Active TSS	Ovary	ovary
13	chr1:59164400-59166200	Active TSS	Right Atrium	heart
14	chr1:59164600-59165800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:59164600-59165800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:59164600-59165800	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:59164600-59165800	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:59164600-59165800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:59164600-59165800	Active TSS	HMEC	breast
20	chr1:59164600-59166000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:59164600-59166000	Active TSS	Stomach Mucosa	stomach
22	chr1:59164600-59166200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:59164600-59166200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:59164600-59166200	Active TSS	Colonic Mucosa	Colon
25	chr1:59164600-59166200	Active TSS	Fetal Intestine Large	intestine
26	chr1:59164600-59166400	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr1:59164800-59165600	Bivalent/Poised TSS	HepG2	liver
28	chr1:59164800-59165800	Active TSS	H1 Cell Line	embryonic stem cell
29	chr1:59164800-59165800	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr1:59164800-59165800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr1:59164800-59165800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:59164800-59165800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:59164800-59165800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:59164800-59165800	Active TSS	K562	blood
35	chr1:59164800-59166000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:59164800-59166000	Active TSS	A549	lung
37	chr1:59164800-59166200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:59164800-59166200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:59164800-59166200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:59164800-59166200	Active TSS	Esophagus	oesophagus
41	chr1:59164800-59166200	Active TSS	Fetal Intestine Small	intestine
42	chr1:59164800-59166200	Active TSS	Fetal Muscle Trunk	muscle
43	chr1:59164800-59166200	Active TSS	Left Ventricle	heart
44	chr1:59164800-59166200	Active TSS	HSMMtube	muscle
45	chr1:59164800-59166400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:59164800-59166400	Active TSS	HSMM	muscle
47	chr1:59165000-59165600	ZNF genes & repeats	Fetal Brain Male	brain
48	chr1:59165000-59165800	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr1:59165000-59165800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:59165000-59165800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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