Variant report

Variant	rs6686388
Chromosome Location	chr1:59168390-59168391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:59168233-59168894	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59162606..59168890-chr1:59243728..59252069,16	K562	blood:
2	chr1:59163564..59170812-chr1:59245390..59251956,13	K562	blood:

Variant related genes	Relation type
MYSM1	TF binding region
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction

rs_ID	r²[population]
rs6587838	0.85[AFR][1000 genomes]
rs6666620	1.00[YRI][hapmap]
rs6698231	0.93[AFR][1000 genomes]
rs7540308	0.83[YRI][hapmap]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59165800-59168600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:59165800-59169200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:59165800-59169200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:59165800-59169400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:59165800-59169400	Weak transcription	HepG2	liver
6	chr1:59165800-59170200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:59165800-59170200	Weak transcription	K562	blood
8	chr1:59166000-59176200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:59166200-59168400	Weak transcription	Fetal Kidney	kidney
10	chr1:59166200-59176200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59166400-59169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:59166600-59168400	Enhancers	Fetal Brain Male	brain
14	chr1:59167800-59168800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:59168000-59168600	Enhancers	Fetal Brain Female	brain
16	chr1:59168000-59171200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:59168000-59171200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:59168200-59169800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:59168200-59169800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:59168200-59170000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:59168200-59171000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:59168200-59171200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links