Variant report

Variant	rs6698231
Chromosome Location	chr1:59169042-59169043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59163564..59170812-chr1:59245390..59251956,13	K562	blood:

Variant related genes	Relation type
ENSG00000177606	Chromatin interaction
ENSG00000234807	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs41287654	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41287658	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41287664	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41298539	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59493428	1.00[AMR][1000 genomes]
rs60008712	1.00[AMR][1000 genomes]
rs6667130	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6686388	0.93[AFR][1000 genomes]
rs6691429	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7518574	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7530611	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533855	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7544937	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450457	chr1:59168759-59169112	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59165800-59169200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:59165800-59169200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:59165800-59169400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:59165800-59169400	Weak transcription	HepG2	liver
5	chr1:59165800-59170200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:59165800-59170200	Weak transcription	K562	blood
7	chr1:59166000-59176200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:59166200-59176200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:59166400-59169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:59168000-59171200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:59168000-59171200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:59168200-59169800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:59168200-59169800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:59168200-59170000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:59168200-59171000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:59168200-59171200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:59168400-59173600	Weak transcription	Fetal Brain Male	brain
19	chr1:59168600-59171200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr1:59168600-59174200	Weak transcription	Fetal Brain Female	brain

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