The 2.0 version of rSNPBase

Variant report

Variant rs60008712
Chromosome Location chr1:59062952-59062953
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59051200-59063400 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr1:59058800-59063200 Weak transcription Stomach Smooth Muscle stomach
3 chr1:59059600-59066600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:59060600-59063600 Enhancers NHDF-Ad bronchial
5 chr1:59060600-59082200 Weak transcription HUVEC blood vessel
6 chr1:59061200-59074000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:59062000-59064600 Enhancers Primary hematopoietic stem cells short term culture blood
8 chr1:59062200-59063000 Enhancers Adipose Nuclei Adipose
9 chr1:59062200-59063000 Enhancers Esophagus oesophagus
10 chr1:59062200-59063000 Enhancers K562 blood
11 chr1:59062200-59063600 Enhancers HSMMtube muscle
12 chr1:59062200-59064000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:59062200-59064600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:59062400-59063000 Bivalent Enhancer Fetal Muscle Leg muscle
15 chr1:59062400-59063400 Enhancers Brain Angular Gyrus brain
16 chr1:59062400-59063600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:59062400-59063600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:59062400-59063600 Enhancers Ovary ovary
19 chr1:59062400-59063800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:59062400-59063800 Enhancers Brain Anterior Caudate brain
21 chr1:59062400-59063800 Enhancers Brain Substantia Nigra brain
22 chr1:59062400-59064200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:59062400-59064400 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr1:59062400-59064600 Enhancers Brain Hippocampus Middle brain
25 chr1:59062600-59063000 Enhancers Placenta Amnion Placenta Amnion
26 chr1:59062600-59063200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:59062600-59063400 Enhancers Osteobl bone
28 chr1:59062600-59063600 Enhancers Monocytes-CD14+_RO01746 blood
29 chr1:59062600-59063800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:59062600-59064400 Enhancers Brain Cingulate Gyrus brain
31 chr1:59062600-59074600 Weak transcription NHEK skin
32 chr1:59062800-59063000 Enhancers Fetal Muscle Trunk muscle
33 chr1:59062800-59063200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:59062800-59063200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:59062800-59063200 Weak transcription Right Atrium heart
36 chr1:59062800-59063200 Enhancers Right Ventricle heart
37 chr1:59062800-59063400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr1:59062800-59063600 Enhancers Aorta Aorta
39 chr1:59062800-59063800 Weak transcription Rectal Smooth Muscle rectum
40 chr1:59062800-59063800 Weak transcription GM12878-XiMat blood
41 chr1:59062800-59064000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:59062800-59064000 Enhancers Brain Inferior Temporal Lobe brain
43 chr1:59062800-59064600 Enhancers Primary hematopoietic stem cells blood
44 chr1:59062800-59074800 Weak transcription HMEC breast

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Last update: Aug 31, 2015