Variant report

Variant	rs6667130
Chromosome Location	chr1:59166724-59166725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59042150..59043809-chr1:59165578..59167965,2	MCF-7	breast:
2	chr1:59152225..59156137-chr1:59164048..59166851,4	MCF-7	breast:
3	chr1:59145973..59148023-chr1:59165325..59167431,2	K562	blood:
4	chr1:59162606..59168890-chr1:59243728..59252069,16	K562	blood:
5	chr1:59163564..59170812-chr1:59245390..59251956,13	K562	blood:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction
ENSG00000177606	Chromatin interaction
ENSG00000184292	Chromatin interaction
ENSG00000234807	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41287654	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41287658	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41287664	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41298539	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59493428	1.00[AMR][1000 genomes]
rs60008712	1.00[AMR][1000 genomes]
rs6691429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6698231	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7518574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7530611	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533855	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7544937	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59165800-59168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:59165800-59168200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:59165800-59168200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:59165800-59168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:59165800-59168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:59165800-59168600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:59165800-59169200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:59165800-59169200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:59165800-59169400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:59165800-59169400	Weak transcription	HepG2	liver
11	chr1:59165800-59170200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:59165800-59170200	Weak transcription	K562	blood
13	chr1:59166000-59176200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:59166200-59167400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:59166200-59167800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:59166200-59168000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:59166200-59168000	Weak transcription	Fetal Brain Female	brain
18	chr1:59166200-59168400	Weak transcription	Fetal Kidney	kidney
19	chr1:59166200-59176200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:59166400-59168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:59166400-59169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:59166600-59168400	Enhancers	Fetal Brain Male	brain

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