Variant report

Variant	rs6588577
Chromosome Location	chr1:56322645-56322646
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4244649	1.00[ASN][1000 genomes]
rs4333889	1.00[ASN][1000 genomes]
rs4369267	1.00[ASN][1000 genomes]
rs4379710	1.00[ASN][1000 genomes]
rs4384273	1.00[ASN][1000 genomes]
rs4497258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503390	1.00[ASN][1000 genomes]
rs4512692	1.00[ASN][1000 genomes]
rs4634948	1.00[ASN][1000 genomes]
rs4926697	1.00[ASN][1000 genomes]
rs4927270	1.00[ASN][1000 genomes]
rs4927271	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662329	1.00[ASN][1000 genomes]
rs7349129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56315000-56323200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:56320000-56323200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:56320600-56323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56320800-56325600	Weak transcription	NHDF-Ad	bronchial
5	chr1:56321000-56325600	Weak transcription	Fetal Lung	lung
6	chr1:56321200-56323000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:56321200-56325400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56321400-56325400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56321400-56325400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:56321600-56325800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56322200-56322800	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:56322400-56323000	Enhancers	Fetal Heart	heart
13	chr1:56322400-56325200	Weak transcription	Left Ventricle	heart
14	chr1:56322400-56333400	Weak transcription	Psoas Muscle	Psoas
15	chr1:56322600-56325200	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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