Variant report

Variant	rs4927270
Chromosome Location	chr1:56296433-56296434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4244649	1.00[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333889	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369267	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379710	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384273	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433442	0.87[CEU][hapmap]
rs4497258	1.00[ASN][1000 genomes]
rs4503390	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512692	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634948	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926697	1.00[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927271	1.00[ASN][1000 genomes]
rs6588577	1.00[ASN][1000 genomes]
rs6662329	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349129	1.00[ASN][1000 genomes]
rs7549387	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56292400-56299400	Weak transcription	Fetal Kidney	kidney
2	chr1:56293800-56298600	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56293800-56298600	Weak transcription	Ovary	ovary
4	chr1:56293800-56298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56293800-56298800	Weak transcription	Osteobl	bone
6	chr1:56293800-56299000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56293800-56299000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:56294000-56298000	Weak transcription	Fetal Stomach	stomach
9	chr1:56294000-56299000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56294200-56298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56294400-56298600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:56296000-56297400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:56296200-56297800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:56296400-56297000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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