Variant report

Variant	rs6589038
Chromosome Location	chr11:108846174-108846175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7939148	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108844200-108849000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:108844800-108846800	Enhancers	A549	lung
4	chr11:108844800-108847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:108844800-108847600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:108844800-108851400	Weak transcription	HSMM	muscle
7	chr11:108845000-108856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:108845600-108847800	Enhancers	Fetal Heart	heart
9	chr11:108846000-108846200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:108846000-108846400	Weak transcription	Psoas Muscle	Psoas
11	chr11:108846000-108846800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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