Variant report

Variant	rs7939148
Chromosome Location	chr11:108844811-108844812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1365045	0.82[AFR][1000 genomes]
rs1425795	0.84[EUR][1000 genomes]
rs17108806	0.97[EUR][1000 genomes]
rs6589038	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108839200-108845800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108843600-108845000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:108843600-108845000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:108843600-108845000	Enhancers	HMEC	breast
6	chr11:108843600-108845200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:108843600-108845200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:108843800-108845000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:108843800-108845000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:108843800-108845000	Enhancers	NH-A	brain
11	chr11:108843800-108845200	Enhancers	HUVEC	blood vessel
12	chr11:108843800-108845200	Enhancers	NHEK	skin
13	chr11:108844200-108849000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:108844400-108845600	Weak transcription	Fetal Heart	heart
15	chr11:108844600-108845000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:108844800-108846800	Enhancers	A549	lung
17	chr11:108844800-108847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:108844800-108847600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:108844800-108851400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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