Variant report

Variant	rs1365045
Chromosome Location	chr11:108843165-108843166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12272371	1.00[EUR][1000 genomes]
rs12276051	1.00[EUR][1000 genomes]
rs12278355	1.00[EUR][1000 genomes]
rs12279766	1.00[EUR][1000 genomes]
rs12291564	1.00[EUR][1000 genomes]
rs12293612	1.00[EUR][1000 genomes]
rs17108567	1.00[EUR][1000 genomes]
rs17108597	1.00[EUR][1000 genomes]
rs17108600	1.00[EUR][1000 genomes]
rs17108665	1.00[EUR][1000 genomes]
rs17108712	1.00[EUR][1000 genomes]
rs17108715	1.00[EUR][1000 genomes]
rs17108771	1.00[EUR][1000 genomes]
rs73545156	1.00[EUR][1000 genomes]
rs73556772	1.00[EUR][1000 genomes]
rs7939148	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108832000-108843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108837000-108843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:108837400-108843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:108838600-108843800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:108838800-108843800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:108838800-108843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:108839000-108843800	Weak transcription	NHDF-Ad	bronchial
9	chr11:108839000-108844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:108839200-108845800	Weak transcription	Psoas Muscle	Psoas
11	chr11:108841000-108843600	Weak transcription	Fetal Heart	heart
12	chr11:108841600-108843600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:108841600-108843600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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