Variant report

Variant	rs17108712
Chromosome Location	chr11:108761747-108761748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108757832..108759632-chr11:108760933..108762823,2	K562	blood:
2	chr11:108754142..108756715-chr11:108759942..108762833,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12272371	1.00[EUR][1000 genomes]
rs12276051	1.00[EUR][1000 genomes]
rs12278355	1.00[EUR][1000 genomes]
rs12279766	1.00[EUR][1000 genomes]
rs12291564	1.00[EUR][1000 genomes]
rs1365045	1.00[EUR][1000 genomes]
rs1466501	1.00[EUR][1000 genomes]
rs17108567	1.00[EUR][1000 genomes]
rs17108597	1.00[EUR][1000 genomes]
rs17108600	1.00[EUR][1000 genomes]
rs17108665	1.00[EUR][1000 genomes]
rs17108715	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17108771	1.00[EUR][1000 genomes]
rs61996357	1.00[EUR][1000 genomes]
rs73545156	1.00[EUR][1000 genomes]
rs73556772	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108757800-108766400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:108757800-108766800	Weak transcription	Stomach Mucosa	stomach
5	chr11:108758400-108766800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:108758600-108764600	Weak transcription	A549	lung
7	chr11:108758600-108766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:108759400-108766000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:108759600-108766400	Weak transcription	Osteobl	bone
10	chr11:108760400-108761800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:108760400-108763200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:108760600-108762200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:108760800-108763000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:108760800-108763200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:108760800-108767800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:108761000-108761800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:108761000-108761800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:108761000-108761800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:108761000-108761800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:108761000-108761800	Enhancers	Ovary	ovary
21	chr11:108761000-108762000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:108761000-108762000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:108761000-108762200	Enhancers	Thymus	Thymus
24	chr11:108761000-108762600	Enhancers	Fetal Thymus	thymus
25	chr11:108761000-108763000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr11:108761000-108763000	Enhancers	Psoas Muscle	Psoas
27	chr11:108761000-108763000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:108761200-108761800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:108761200-108761800	Enhancers	Adipose Nuclei	Adipose
30	chr11:108761200-108762400	Enhancers	Fetal Muscle Leg	muscle
31	chr11:108761200-108763000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:108761400-108761800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:108761400-108761800	Enhancers	Fetal Kidney	kidney
34	chr11:108761600-108762000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:108761600-108762400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:108761600-108763200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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